| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_1832 |
|---|
| Symbol | |
|---|
| ID | 6312721 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | + |
|---|
| Start bp | 1970304 |
|---|
| End bp | 1971203 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 642650555 |
|---|
| Product | squalene synthase HpnC |
|---|
| Protein accession | YP_001924530 |
|---|
| Protein GI | 188581085 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1562] Phytoene/squalene synthetase |
|---|
| TIGRFAM ID | [TIGR03464] squalene synthase HpnC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCCG CGCTTCAGAC CGCCACCGAT GCCCGGACCG GCAAGGGCCA GCACGACGAG
AACTTTCCCG TCGCCTCGCA CCTGATCCAC CCGCGCAACC GCGGCGCGAT CCTCGCCTTC
TACAACTACG TGCGGGCGGG CGACGACGTC GCCGACCACA CCGGGCTGTC GCCCGAGCGC
AAGATCGAGA TGCTCGACGC GCTCGCCGAC GCGCTCACCG GCAAGGGCGG CTCCGACCCG
TCCGTCGAGC CGCTGAAGCG CGAACTCGCG GCCCACAATC AGCCGCCGAC CCATGCCCTC
GAATTGCTCG ACGCCTTCCG CATGGATGCG CGCAAATCGC GCTACGCGGA TTGGGACGAG
CTGATCCACT ATTGCCGCTA CTCGGCGATG CCGGTCGGGC GCTTCGTCCT CGACGTGCAC
GGCGAGGATC CGGCGCGGGT CTATCCGACC TCGGACGCGA TCTGCGCCGC GTTGCAGGTG
CTCAACCACC TCCAGGATTG CGGCAAGGAT TTCCGCAATC TCGACCGCGT CTACATCCCC
CTCGACGTGA TGGGTAAGCA CGGCGCCGAC GTCGCGATGC TGGGGGCGGA CAAGGCGACG
CCCGAACTGC GTGCCGTGAT CCGCGAACTC GCCGAGCGCA CCCTGGTGCT CTTGGAGGAA
GGCGCGCCGC TGCCGAACCG GATCGATGAT TTCCGCCTCA GCCTGGAGAT CGCCGCGATC
CATCGGCTGG CCGTCGTGCT GACCAAGGGC CTGCTGACCC GTGATCCGCT GTCGGAGAAG
GTCCATCACG GCAAGGCCGC CTTCGCGCTC ACCGCGCTCG GCGGCATCGC CGCCACCCTG
GTGCGCCGGC CGTTCCGGTC GCGTGCGCCC CGTCCCGCCG CTGCCGGAGC CGGCCGATGA
|
|---|
| Protein sequence | MSAALQTATD ARTGKGQHDE NFPVASHLIH PRNRGAILAF YNYVRAGDDV ADHTGLSPER
KIEMLDALAD ALTGKGGSDP SVEPLKRELA AHNQPPTHAL ELLDAFRMDA RKSRYADWDE
LIHYCRYSAM PVGRFVLDVH GEDPARVYPT SDAICAALQV LNHLQDCGKD FRNLDRVYIP
LDVMGKHGAD VAMLGADKAT PELRAVIREL AERTLVLLEE GAPLPNRIDD FRLSLEIAAI
HRLAVVLTKG LLTRDPLSEK VHHGKAAFAL TALGGIAATL VRRPFRSRAP RPAAAGAGR
|
|---|
| |