| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_0646 |
|---|
| Symbol | |
|---|
| ID | 6312640 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | + |
|---|
| Start bp | 689335 |
|---|
| End bp | 691332 |
|---|
| Gene Length | 1998 bp |
|---|
| Protein Length | 665 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 642649354 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_001923359 |
|---|
| Protein GI | 188579914 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.123915 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.553141 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCCGGCT ACGTCGCCAA GCGCAGCGCC ACCGGCACCA AGACCGACAC GGCGCTGGCC
GAGACGCCGC AATCGATCTC GGTCGTCGGC GAGCAGCAGG TCCGCGAGCA GGCGGCCACC
AGCGTGCAGG AAGCCCTGCG CTACACGGCC GGCGTCGCGG CGGAAGCCTA CGGCCCGAGC
ACCCGCGGCG ACTACCCGCG CATCCGCGGC TCGGACGCGG CGATCTTCCT CGACGGCCTG
CGCCTGAAGG ACCCCGACGT CTTCAACGAG CCGCGGCCGG ACCCCTACAC CCTGTCGCGC
TTCGAGGTGC TGCGCGGCCC CGCCTCGACC CTCTACGGGT CGAGCCCGGT CGGCGGCCTG
ATCAACCTCG TCTCGAAGCG GCCCCTCGAC GTGCCCTACA CCGAGGCCGG AATCCGCTTC
GGCAATTACG GCTGGAAGGA AGCCTTCACC GACTCGACCG GGCGCCTGAG CGAAGACGGG
CAGTTCCTCT ACCGCTTCGT CGGCATCGGC CGGCTCGCCG ACGCGCAGAC CGATTTCGTC
GCCAACGACC GCTACGTCCT CAACCCTTCG GTGACGTGGC GCCCCTCCGC CGACACGACC
TGGACCCTGA TCGGCCTGCA CCAGAAGGAT GCGTTCGGCG CCTCCGACGC CTTCCTGCCG
CGCGAGGGCT CGCTCTATGC CGGCCCCAAC GGCTTCATTC CCCTGAACCG CTTCACGGGC
GATCCGAACT TCAACCGCTA CGAGACCGAG ACGAGTTCGA TCACCAGCCT GTTCGAGCAC
CGCTTCGACG ACAGCCTGAT CCTGCGGCAG AACCTGCGCT ACAGCCACAT CGACGGCACC
TATCAGTCCG CCTACGGCAA CGTGTATACG CTGACGCCGA GCGCCGACCT GCCGAACGCG
CCGTTCCTCG ATCCCGCCCG CCGGACGGTC GACCGGTTCA CCTACCGGGT CAGCTCGGTC
AAGGACCGGA TCACCACCGA CACCAACCTC CAGGGGCGCT TCGACACCGG GCCGATCTCG
CACGTGGTGC TCGGCGGCGT CGATTTCCGC CAGCAATGGG ACAGCACGCG AACCGGCTTC
GGCACCGATC CGCGCCCGTT CGACCTCTAC GCGCCGGTCT ATGTCGGCGT GACGCCGCCG
GATCTCGGCG TGCCGACCGC GCTCTCGCAG AGCCAGACCG GTCTCTACCT TCAGGATCAG
ATCAAGTTCG GCCAGTGGAT CGTGCTCGCC ACCCTGCGGC ACGATTGGGT GAACAGCGCG
ACCCGCGGCG CCGAGAGCAC GTCGGGCGAG GCCACCACCG GCCGCGTCGG CCTGATGTAC
GCCTTCGAGA ACGGGCTGAC CCCTTACGTC TCCTACGCGA CCTCGTTCAC CCCGATCTTC
GGCGCCAATG TCTGCGCGGG CGGGGCTTGC CGGCCGATCG AGGGCGAGCA GATCGAGGGT
GGCTTCAAGT ACAACCCGAC GCCGTGGTTC GCAGTCAACG CGGCGATCTA CGACACGACG
GAGCGCAACC GCCTCGCCCC CGATCCGAGC GGCCTGCCGA TCTCGATCCA GACCGGCAAG
GTCAAGATCC AGGGCGGCGA CATCGAGGCC ATCGCCACCA TCAACGGCGA CACCAACATC
ATCGCGAGCT ACGCCTACAC CGACGCCCGC TACGCCGCCG GCGCCAATGC CGGGGCGCGG
GTCGAGACGC AGCCGCTGCA CCTCGCCTCG CTCTGGGTGA CGCACCGCTT CACCCTCTCG
GAGGTGCCCG GCGCCTTCCT CGTCGGCGGC GGCGTACGCT ACATCGGCGA ATCCTTCGAC
GGCTCGCTCA ACAGCTTCAA CACGCCCGCC GTGACACTCG CCGACGCGCT GATCGGCTGG
GAGGACGCGC ATTGGCGCGC CCAGCTCAAC GTCTCCAACA TCGCCGACAC GCGGTATCTC
TCGACCTGCC TCGCCCGCGG CGATTGCTTC GTCGGCACCC GGCGCACGAT CCTCGGCAGC
CTCACCTACA AGTTCTAG
|
|---|
| Protein sequence | MPGYVAKRSA TGTKTDTALA ETPQSISVVG EQQVREQAAT SVQEALRYTA GVAAEAYGPS
TRGDYPRIRG SDAAIFLDGL RLKDPDVFNE PRPDPYTLSR FEVLRGPAST LYGSSPVGGL
INLVSKRPLD VPYTEAGIRF GNYGWKEAFT DSTGRLSEDG QFLYRFVGIG RLADAQTDFV
ANDRYVLNPS VTWRPSADTT WTLIGLHQKD AFGASDAFLP REGSLYAGPN GFIPLNRFTG
DPNFNRYETE TSSITSLFEH RFDDSLILRQ NLRYSHIDGT YQSAYGNVYT LTPSADLPNA
PFLDPARRTV DRFTYRVSSV KDRITTDTNL QGRFDTGPIS HVVLGGVDFR QQWDSTRTGF
GTDPRPFDLY APVYVGVTPP DLGVPTALSQ SQTGLYLQDQ IKFGQWIVLA TLRHDWVNSA
TRGAESTSGE ATTGRVGLMY AFENGLTPYV SYATSFTPIF GANVCAGGAC RPIEGEQIEG
GFKYNPTPWF AVNAAIYDTT ERNRLAPDPS GLPISIQTGK VKIQGGDIEA IATINGDTNI
IASYAYTDAR YAAGANAGAR VETQPLHLAS LWVTHRFTLS EVPGAFLVGG GVRYIGESFD
GSLNSFNTPA VTLADALIGW EDAHWRAQLN VSNIADTRYL STCLARGDCF VGTRRTILGS
LTYKF
|
|---|
| |