| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_04723 |
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| Symbol | |
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| ID | 6304870 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | - |
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| Start bp | 1349570 |
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| End bp | 1352332 |
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| Gene Length | 2763 bp |
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| Protein Length | 920 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 642638643 |
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| Product | RhsD protein |
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| Protein accession | YP_001912520 |
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| Protein GI | 188575591 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.370413 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAATATG TCGATGGTCC GTTAGCGGGC TCCGTCGATC GAACTAATTT TCTTTATTAT
CAAAATTCCG CATCAGGCTG TGCCAATCCC CCCTCAGCGT GCCAATATCG CAAAGGCGAT
CTCTGGAAAG TGACTGACGC TCTCGGTCAC GTGACAGAAA CACTGTCTTA CGACGGCGCA
GGCCGCCCGC TGTCCATCAA GGACGCCAAC GGCATCGTCA CCGATTACAC CTACCACCCG
CGCGGTTGGC TGACCGCCAC CAAGGTGCGC GGCGCCGATG CGTCCAGCGA GGCCGATGAC
CGCATCACCC GCATCGACTA TTGGCCCACC GGCCTGGTCA AGCAGGTCAC CCAGCCCGAT
GGCGCGTTCA CTGCCTTCAC CTACGATGCG GCGCATCGGC TGACCGACGT CACCGACAAT
GCGGGCAATA CCGTCCACTA CACGCTGGAC AACGCCGGCA ATCGCGTCAA GGAAGACACC
AAGGACGCGG CCGGCACGTT GAAGCGCACG CTCTCGCGCG TGTACAACCA GCTCGGCCAG
CTCAAGACGC AGGCCACCGC AGCCAGCGAC CCCACCGACT TCACGTACGA CGCCAACGGC
AACGCCACCA AAGTGACCGA TGCGCTGGCA ACCGCAACCC AGAGCGAGTA CGACCCGCTC
AACCGGCTCT CGCGCACGCT GCAGGATGTT GCCGGCATCA AGGCCGACAC CAAATTCGAG
TACGACGCGC TCGATAATCT GACTAAAGTC ACCGACCCCA AGGGCCTGGA TACCAAATAC
GAGTACAACG GGTTTGGCGA CCTGGTGAAG CTCACCAGCC CGGACACCGG CGTCACCCGC
TACACCTACG ACAGCGCCGG CAACCGTGCC ACCCAGACCG ACGCGCGCGG CAACACCACC
GCCTACAGCT ACGACGCGCT CAATCGCCTG ACCAAGGTCA CCTACCCCAC CTCCAGCCTC
AACGTCACCT ACACCTATGA CGTGACGCAG ACGGCCTGCG CGAGCGGGGA GACCTTCTCC
ATCGGCCGCC TGACCAAGAT GCAGGACGGC GGCGCCATCA CCCAGTACTG CTACAACCGC
TTCGGCGATC TGGTGCGCAA GGTGCAGACC AGCAACGGCA CCACGCTGGT GCTGCGTTAT
GACTACACCG TCGGCGGCCA GTTGCGGCGT ATGACGTATC CCGATGGGGC AGTGGTCGAT
TACGTGCGCA ACACGCAAGG CCAGACCACC GAGGTCGGCG TGACCCCGGC CGGCGGTAGC
CGGCAGGTGC TGCTGGGCAA TGCCAGCTAC TACCCGTTCG GCCCCGCTGC CGGCTGGACC
TACGGCAATG GCCGCACCCT CGCCCGCCGC TACGATCTGG ACTACCGCCC GCGGGCCATC
CAGGACACCC GCCCGGGTGG GCTGGAGGTG GGCTTCGGCT TCGACCCGGC CGGCAACCTC
ACCGCGCTGT CGCCGGCAGG CAACACCACA CCGGAAATCA GGCTGGGCTA CGACACCCTG
GGCCGCCTCA CAGCGCTCAA GGACGGCAAC ACCGGCACGC TGATCGACGG CTACAGCTAC
GATGCCACCG GCAACCGCCT CAGCGCCAAG GTCGGAACGG CCACGCAGAT CTACACCTAT
CCAACCGACA GCCATCGCCT GCGTGCGGTA GCGAGCGTGG CACGCACGTA CGACAAGACG
GGCAACACGC TGACGATCGG CGGCAAAGCA AGAGAGTTCT TCTACGATGC CTCCGGCCGC
ATGAGCATGG CCAAGCGTGC CGGCGCGCTG GTGATGAACT ACCGCTACAA CGGTAAAGGC
GAACAGGTGC AGCGCTTCCT CGGCACCACA AACACCTACA CGCTCTACGA TGAAGCCGGC
CACTGGCTGG GCGACTACGA CAGCAATGGC ACCCCCAAGC AGCAAGCGAT CTGGTTGGAT
GATCTACCGG TCGGCCTGCT GGCTAACGCC AACAAGCTGC ACTACATCGA ACCCGATCAC
CTGGGCAGCC CGCGCGTGGT GATCGACCCC ACCCGCAATG TGGCGGTGTG GACGTGGAGC
TTGAAGGGCG AAGCCTTCGG CAACACCGCG CCGAATCAGG ATCCTGATGG CGATGGTGCG
GCGCTGGTGT TGGATATGCG CTTTCCAGGG CAGCGGTTTG ATGCGGCGAG TGGGTTGAAT
CAGAATTACT TCCGGGACTA TGAAACCATC AACGGAAGAT ATGTAGAAAG TGATTCGTTG
GGACTTGCTG CAGGGATCAG CACTTACTCT TATGTCCTTT CAAGTCCACT GATGGACTCC
GACTCTCTCG GGCAGCAGTC AAGTGCGATG AGAGGTATTC GCGCACCAAT CAGCGGCTCA
ACAAATGCTG GACTTGCAGA CGACGGCAGC TCCCCTTCAG CCGGAAACGC CCAAGCTGCT
GCGACAGTTG CTATGGCTGC TGTTGGCATA GCCAATGCCG TAAGTTCAAT GCCTGGCGGT
GCAGTTTTGA GCCTACCGAT AACAGCTGCA AAAATTTGCC AAGACCCTGA TGACGAAGAG
TGTCTAAAAC TTCGGGCTGA AGTCCAAAGA AATAAATCTA TCGTTTCAAC ATTAGGAAAA
TGCAGGCCTG GCATGTCACG AGGCGCATTG GGCGTGCGGC GTGAAGCATG GTTGAATCTC
GCAGTCTCCA GGGCAAGGCG TGACGAAAAA TGCTACTCAG GTGGCGACGA AGGCCATCAA
GAGGCGCATG CTGCAGCTTG GCAGAATGCT GGCGTTTGCA GCAATTTAAT GGGGGGATTG
TGA
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| Protein sequence | MKYVDGPLAG SVDRTNFLYY QNSASGCANP PSACQYRKGD LWKVTDALGH VTETLSYDGA
GRPLSIKDAN GIVTDYTYHP RGWLTATKVR GADASSEADD RITRIDYWPT GLVKQVTQPD
GAFTAFTYDA AHRLTDVTDN AGNTVHYTLD NAGNRVKEDT KDAAGTLKRT LSRVYNQLGQ
LKTQATAASD PTDFTYDANG NATKVTDALA TATQSEYDPL NRLSRTLQDV AGIKADTKFE
YDALDNLTKV TDPKGLDTKY EYNGFGDLVK LTSPDTGVTR YTYDSAGNRA TQTDARGNTT
AYSYDALNRL TKVTYPTSSL NVTYTYDVTQ TACASGETFS IGRLTKMQDG GAITQYCYNR
FGDLVRKVQT SNGTTLVLRY DYTVGGQLRR MTYPDGAVVD YVRNTQGQTT EVGVTPAGGS
RQVLLGNASY YPFGPAAGWT YGNGRTLARR YDLDYRPRAI QDTRPGGLEV GFGFDPAGNL
TALSPAGNTT PEIRLGYDTL GRLTALKDGN TGTLIDGYSY DATGNRLSAK VGTATQIYTY
PTDSHRLRAV ASVARTYDKT GNTLTIGGKA REFFYDASGR MSMAKRAGAL VMNYRYNGKG
EQVQRFLGTT NTYTLYDEAG HWLGDYDSNG TPKQQAIWLD DLPVGLLANA NKLHYIEPDH
LGSPRVVIDP TRNVAVWTWS LKGEAFGNTA PNQDPDGDGA ALVLDMRFPG QRFDAASGLN
QNYFRDYETI NGRYVESDSL GLAAGISTYS YVLSSPLMDS DSLGQQSSAM RGIRAPISGS
TNAGLADDGS SPSAGNAQAA ATVAMAAVGI ANAVSSMPGG AVLSLPITAA KICQDPDDEE
CLKLRAEVQR NKSIVSTLGK CRPGMSRGAL GVRREAWLNL AVSRARRDEK CYSGGDEGHQ
EAHAAAWQNA GVCSNLMGGL
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