Gene PXO_04540 details

Gene Information

• Locus tag: PXO_04540
• Symbol: pth
• ID: 6304746
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xanthomonas oryzae pv. oryzae PXO99A
• Kingdom: Bacteria
• Replicon accession: NC_010717
• Strand: +
• Start bp: 1234165
• End bp: 1234749
• Gene Length: 585 bp
• Protein Length: 194 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 642638520
• Product: peptidyl-tRNA hydrolase
• Protein accession: YP_001912401
• Protein GI: 188575472
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0193] Peptidyl-tRNA hydrolase
• TIGRFAM ID: [TIGR00447] peptidyl-tRNA hydrolase

Plasmid Coverage information

• Num covering plasmid clones: 30
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTGCAC TCCGCCTGAT CGTTGGACTC GGTAACCCGG GCCAGGAACA CGCGCAAACC 
CGGCATAACG CCGGGTTTCG TTTCGTCGAT TCCCTCATCG AGCGCAGTGG CGCCCGCTGG 
GCATTGGACA GCAAGTTGTT CGGCGAGACC GCCAAGGTCG ATATCGCAGG GCAGCCGGTC 
TGGCTGCTCA AGCCAGCCAC CTTCATGAAT CTCAGCGGCA AGTCGATCAC CGCCGCATTG 
CGGTTCTGGA AGATCGAGCC GGAGCACCTG CTCGTCGCCC ATGACGAACT GGATCTGGCG 
CCCGGCACGG CGCGGCTCAA GTTCGACGGT GGTCACGGCG GACAAAACGG TCTGCGCGAC 
ACCATTGGCC TGCTCGGGCA TGGCAAATTT CACCGTCTGC GCGTTGGCAT TGGCCATCCC 
GGTCACAAGG ACCGTGTGGT GCCCTGGGTG CTTGGACGGG CAGGGCGCGA GGATGACGCC 
GCGATTGGCA CTGCCATCGA CGCCGCTATC GACGTGCTAC CGCTGGCGAT GGAAGGTCAT 
TTCAGCGAGG CGATGAAACG TCTGCACACC AGCAGGGATG CGTGA 

 

Protein sequence

MSALRLIVGL GNPGQEHAQT RHNAGFRFVD SLIERSGARW ALDSKLFGET AKVDIAGQPV 
WLLKPATFMN LSGKSITAAL RFWKIEPEHL LVAHDELDLA PGTARLKFDG GHGGQNGLRD 
TIGLLGHGKF HRLRVGIGHP GHKDRVVPWV LGRAGREDDA AIGTAIDAAI DVLPLAMEGH 
FSEAMKRLHT SRDA