| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_04478 |
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| Symbol | raxA |
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| ID | 6304811 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | + |
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| Start bp | 1284222 |
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| End bp | 1285460 |
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| Gene Length | 1239 bp |
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| Protein Length | 412 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 642638584 |
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| Product | putative membrane fusion protein/putative ABC transporter protein required for AvrXa21 activity A (raxA) |
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| Protein accession | YP_001912461 |
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| Protein GI | 188575532 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGCGCT TGTTTCGGCG CGAGGTGATG GATGCGCAGC AGCGCAGTCG GCTGGGGCCA
GTGGTGCTTC GCCAGCGTGG CGCGCTGGGT TGGTGCGTGG GCGTGCTGAT GGCAACGGTG
ATCCTGCTGC TGGTGGGATT TTTCTGCCTG GGGTTCGCGC GTCGCCAGAC CTTGTATGGC
GCTGTCGTCC CGGCTGACGG AATGATCGCC ATCACCACCC CGCAATCGGG CGTGGTGGCA
AACGTCGGCG TCGTGCAGGG CCAGAGGGTT GCCGCTGGTC AGGTGCTGTT CGTGTTGGCG
GCCGAGCATC GGGATGATCG CGGGCGGCCA AGCCAGCAGG CCGCTGCCGT GCTCGCCGAG
CAGCAGCGCC TGACTGCCGA AGCGATGGTC CAACTACGCG CCCAGGGCCG CTTGCAGCAG
CAAGCGGCCG CGCGGGCGCT GGCCGGCCTG CGCAACCGCC TGGAGCAGGT CGACGCCGAG
CTTGGCGTGC TGCGCCATCG GCAGCAGCTG ACCCAATTCA TCGAGCAGCG TTACCGCACC
GCCTTGACGC GTGGCCTGGT CAGTCAGCAA TTCGTCGATG AGAAGCAGGC CGACGTGCTC
GACCAACGCG CGCATGCATT GGAACTGCAG CGCGAGCGCT TGACCTTGGC CGATGCCCTG
GCGCAGGCCC AGGCCGAGTT GCAGCAACTG CCGGTGAGCT TGCGCCAACA ATTGGCGCTG
GCCGGTGCCA GCCTGCAGGC GGACCGGCGT ACGGCGATCG AGCAGGCAGC CGCCTCGCGT
TGGGAAGTGC GCGCTCCGCG TGCAGGGCGT GTGGCGTTGC GACCGCTGCA GCGTGGGCAG
GCGGTCGGGC AGGGGCAGCG GCTGGCCGAT CTGCTGCCGA CCTCGACGGC GACCGAAGTG
GTGTTGTACG CACCCTCCCG GGCGGCAGGG CTGATCGGCC CCGGCATCCC GGTGCAACTG
CGCTTCGATG CCTTGCCCTA CCAGCACTAC GGCCAGTTTG CCGGGCGTGT GGTCGAGATC
GCCGCCGCGC CCGAACCGCC GCGTGCCGAC GCGGCGTTGG CGAGCGAACC GTTGTACCGC
GTGCGGGTGC GCCTGGCCGG GGATGCCGCC CTGCGTGCAG GACATGCTGC GGTGCTGCGA
CCGGGCATGC GCGTGCAGGG CACGCTGGCA TTGGAATGGC GGCGCTTCTC GCAGTGGGCC
TTCGAGCCGC TGTCCAGCCT GCACGGCACG CTGCGATGA
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| Protein sequence | MTRLFRREVM DAQQRSRLGP VVLRQRGALG WCVGVLMATV ILLLVGFFCL GFARRQTLYG
AVVPADGMIA ITTPQSGVVA NVGVVQGQRV AAGQVLFVLA AEHRDDRGRP SQQAAAVLAE
QQRLTAEAMV QLRAQGRLQQ QAAARALAGL RNRLEQVDAE LGVLRHRQQL TQFIEQRYRT
ALTRGLVSQQ FVDEKQADVL DQRAHALELQ RERLTLADAL AQAQAELQQL PVSLRQQLAL
AGASLQADRR TAIEQAAASR WEVRAPRAGR VALRPLQRGQ AVGQGQRLAD LLPTSTATEV
VLYAPSRAAG LIGPGIPVQL RFDALPYQHY GQFAGRVVEI AAAPEPPRAD AALASEPLYR
VRVRLAGDAA LRAGHAAVLR PGMRVQGTLA LEWRRFSQWA FEPLSSLHGT LR
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