Gene PXO_04147 details

Gene Information

• Locus tag: PXO_04147
• ID: 6304376
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xanthomonas oryzae pv. oryzae PXO99A
• Kingdom: Bacteria
• Replicon accession: NC_010717
• Strand: +
• Start bp: 863074
• End bp: 863676
• Gene Length: 603 bp
• Protein Length: 200 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 642638154
• Product: Putative signal protein with GGDEF domain
• Protein accession: YP_001912036
• Protein GI: 188575107
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2199] FOG: GGDEF domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 30
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTGCGCG GTTTTGCGCG CTTTTTACAG AATTACCGCA GCCTGCTCGA CGACGCCCAG 
CGCGATGCAC TGACCTGCCT GCGCAACCGC AAAACGTTCG ACGATGTGAT CCTGCGGCTG 
TTTGCGGGCG GTGCCGAATC CAGCGCGGAA CAGGGCGTGT GGCTGGGCAT CGTGGACATC 
GATCACTTCA AACGCGTCAA CGACACCTTC GGGCATCTGT ACGGCGACGA AGTGCTGCTA 
TTGGTCGCCC AGCTGATGCA ACGTGCGTTT CGCCAGCACG ACCTGCTGTT CCGCTTCGGC 
GGCGAAGCGT TCGTGATCGT AGTGCGCGGC GTGGACCGCG ACACCGCCGT GAGTCTGTTC 
GAGCGGTTAC GGCTGGCCGT GGCCCAGCAC CTGTTTCCGC AGGTGGGGCA GGTCACGCTC 
AGTACCGGCA TCGTCGAACT GACCCACGGC CGGCTGATCA GCGAAATGCT GGACGAAGCC 
GACAAGGCGC TGTACTGGGC CAAGCAACAT GGCCGCAATC GCGCGGCGCT GTATGCCGAG 
CTGATTGCCA GCGGGCAGTT GCAGCAGATT GCGCAAGCCG TAGGCAGCGT CGATCTGTTC 
TAA 

 

Protein sequence

MLRGFARFLQ NYRSLLDDAQ RDALTCLRNR KTFDDVILRL FAGGAESSAE QGVWLGIVDI 
DHFKRVNDTF GHLYGDEVLL LVAQLMQRAF RQHDLLFRFG GEAFVIVVRG VDRDTAVSLF 
ERLRLAVAQH LFPQVGQVTL STGIVELTHG RLISEMLDEA DKALYWAKQH GRNRAALYAE 
LIASGQLQQI AQAVGSVDLF