Gene PXO_03403 details

Gene Information

• Locus tag: PXO_03403
• Symbol: hrcV
• ID: 6303598
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xanthomonas oryzae pv. oryzae PXO99A
• Kingdom: Bacteria
• Replicon accession: NC_010717
• Strand: -
• Start bp: 71428
• End bp: 73314
• Gene Length: 1887 bp
• Protein Length: 628 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 642637392
• Product: HrcV
• Protein accession: YP_001911277
• Protein GI: 188574348
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG4789] Type III secretory pathway, component EscV
• TIGRFAM ID: [TIGR01399] type III secretion protein, HrcV family

Plasmid Coverage information

• Num covering plasmid clones: 26
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGCGATCG CCGCCTTGGT GGTGGCGGTC ATCGGGCTGA TGATCCTGCC CCTGCCAACG 
CCCATGATCG ATACGCTACT GGGCATCAAC ATCACCCTGA GCGTGGTGCT GTTGATGGTC 
ACGATGTATG TGCCCGACTC GATCTCACTC TCGTCGTTTC CTTCCCTGCT GCTGTTCACC 
ACCCTACTGC GGTTGTCCTT GAATATCGCT TCGACGAAGT CGATCCTTCT GCATGCCGAG 
GCGGGCCATA TCATCGAGAG CTTTGGCGAG TTGGTGGTCG GCGGCAATCT GGTGGTGGGC 
CTGGTCGTTT TCTTGATCAT CACCACCGTG CAGTTCATCG TGATCGCAAA GGGCTCCGAG 
CGCGTTGCCG AGGTCGGTGC GCGCTTTACG TTGGACGCAA TGCCCGGCAA GCAGATGAGT 
ATCGATGCCG ACCTGCGTGG CGGCAACTTG ACCGCAGATG AGGCACGCCG CAAACGCGCG 
CGGCTGGCCA TTGAAAGCCA ACTGCACGGC GGCATGGATG GCGCCATGAA ATTCGTCAAG 
GGTGATGCGA TCGCCGGCCT GGTGATCACC ATGGTCAACA TCCTGGCCGG CATCGTGGTC 
GGCGTGACGT ACCACGGCAT GACGGCGGGC GACGCCGCTA ACCGCTTTGC GATTCTGTCG 
GTGGGCGATG CCATGGTGTC GCAGATCGCC TCACTGCTGA TATCGGTGGC TGCCGGCGTC 
ATGATCACCC GCGTGGCCAA TGAAAACGAG ACCAGGCTCA GCTCGCTCGG GCTCGATATC 
GGCCGTCAGC TCACCAGCAA CGCGCGAGCG CTGATGGCAG CGAGCGTGCT GCTGGCCTGC 
TTTGCATTCG TCCCTGGCTT TCCGGCCGTG CTGTTCCTGC TGCTGGCAGC GGCCGTCGGC 
GCCGGCGGCT ATGCGATCTG GCGCAAGCAA CGCGACATCA GCGGCAACGA TCAGCGCAAG 
TTGCCTTCGA CGAGCCGTAA AGGTGCCAAA GGCGAGGCGC CACATATTCG CAAAACCGCT 
CCTGACTTCG CCTCACCGTT GTCGATGCGG CTGTCGCCGC AGCTGGCTGC TCTGCTCGAC 
CCCGCGCGGC TGGATCAGGC GATCGAAAGC GAGCGCCATC AATTGGTCGA GTTGCTGGGC 
TTGCCGTTTC CCGGGATTGC GATATGGCAG AGCGAGTCGC TGCAAGGCAT GCAATACGAG 
GTGTTGATTC ACGATGTCCC CGAGACACGC GCCGAACTGG AGAACACGGA GGACATGCAG 
GGAGCACTGG CCCGGCAGGC CATCGCGCCC CTGCATGCAC GGGCGCACTT GTTCGTCGGC 
ATCCAGGAGA CGCAGTGGAT GCTGGAGCAG GTGGCTGCGG ACTATCCCGG GCTGGTTGCG 
GAGGTCAACA AGGCGATGCC CGCCCAGCGC ATTGCCGATG TGTTGCGGCG TCTACTGGAA 
GAAAGGATTC CGGTGCGCAA TATCAAGAGC ATTCTGGAGA GTCTGGTGGT ATGGGGGCCG 
AAGGAAAAGG ATCTTCTGAT GTTGACCGAA TATGTGCGCT GCGACCTCAG CCGTTATCTT 
GCGCATACCG CCACCGCAGG CACCGGGCAG CTGCCCGCAG TGATGCTCGA CCACGCTGTC 
GAACAATTGA TCAGGCAATC GATTCGCGCG ACCGCGGCCG GCAATTTCCT GGCACTTCCG 
CCCGAGCAGG CGAACCAGCT TGTCGAACAG GTGGAACGCA TCGTTGGCGG TCAGGCGCAG 
CATCCGATGG CGGTGGTCGC GTCGATGGAC GTGCGCAGAT ATGTACGCCG CATGATCGAA 
GCACGGCTGA CGTGGCTGCA GGTCTATTCG TTCCAGGAGC TGGGTTCGGA GGTACAGCTG 
CAGCCGATCG GTAGAGTGGT GGTGTGA 

 

Protein sequence

MAIAALVVAV IGLMILPLPT PMIDTLLGIN ITLSVVLLMV TMYVPDSISL SSFPSLLLFT 
TLLRLSLNIA STKSILLHAE AGHIIESFGE LVVGGNLVVG LVVFLIITTV QFIVIAKGSE 
RVAEVGARFT LDAMPGKQMS IDADLRGGNL TADEARRKRA RLAIESQLHG GMDGAMKFVK 
GDAIAGLVIT MVNILAGIVV GVTYHGMTAG DAANRFAILS VGDAMVSQIA SLLISVAAGV 
MITRVANENE TRLSSLGLDI GRQLTSNARA LMAASVLLAC FAFVPGFPAV LFLLLAAAVG 
AGGYAIWRKQ RDISGNDQRK LPSTSRKGAK GEAPHIRKTA PDFASPLSMR LSPQLAALLD 
PARLDQAIES ERHQLVELLG LPFPGIAIWQ SESLQGMQYE VLIHDVPETR AELENTEDMQ 
GALARQAIAP LHARAHLFVG IQETQWMLEQ VAADYPGLVA EVNKAMPAQR IADVLRRLLE 
ERIPVRNIKS ILESLVVWGP KEKDLLMLTE YVRCDLSRYL AHTATAGTGQ LPAVMLDHAV 
EQLIRQSIRA TAAGNFLALP PEQANQLVEQ VERIVGGQAQ HPMAVVASMD VRRYVRRMIE 
ARLTWLQVYS FQELGSEVQL QPIGRVVV