| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_02728 |
|---|
| Symbol | |
|---|
| ID | 6307902 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | - |
|---|
| Start bp | 4506989 |
|---|
| End bp | 4509205 |
|---|
| Gene Length | 2217 bp |
|---|
| Protein Length | 738 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642641631 |
|---|
| Product | TonB-dependent outer membrane receptor |
|---|
| Protein accession | YP_001915469 |
|---|
| Protein GI | 188578540 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGCCA GCCGGTCGCT CAAGATCAGC GCGCTCGCCG TTGCCGTCGT TTCCCTTCTT
CCGCTTGCCG CTGCCGCCCA GCAGGCGCCC AGCGACGACG GTGTCGTGCG TCTGGATGCG
GTCAAGGTCA CGGTCGAGCG TCGTTCGGAA GACTCCAAGG ACGTGCCGGT CTCCGCATCG
GTGCTGCGCC CGGAATTCCT GGATGCCATC TCCACCAGCG GCTCGGACAT CCGTGTGCTG
GCCGGCAAGG CGCCCAGCCT CAATATCGAA TCGTCCAACG GCCGTGTGTT CCCGCGCGTG
TACATCCGCG GCTACGGCAA TACCGACTTC AATACCTATG CCTCGCAGCC GGTGTCGTTG
ATCTATGACG ACGTGGTGCA GGAAAACGTG TTCTTGAAGG GCTTCCCGAT CTTCGATCTG
GAAGGTCTGG AAGTGCTGCG CGGTCCGCAG GGCACGCTGT TCGGCCGCAA TACGCCGGCC
GGCGTGGTGA AGTTCAACTC GGTCAAGCCA ACCATCGGCG CCAATGACGG CTACGCCAGC
CTGTCGTACG GCACCTACGG CACCATGACC CTGGAAAGCG GCCTGAGCAT CGCCATGGGC
GACCATTGGG CAGCGCGTCT GTCCACCCTG GGTCAGCGCC GCGACGATTG GGTGGAAAAC
CGCGACGGCC GCGATCTGGA AGGCTATACG GATTCGGCCG TGCGTCTGCA GTTGCTGTAC
CAGGCCAGCG ACGATTTCAG CGCGTTGTTC AACGCGCATG CGCGCCATCT GGACGGCACC
GCGCGCCTGT TTCGCGCCAA CATCATCCAG CCGGGTACCA ACCAGCTGGT CGAGGGTTTC
GATCCGGAAA ACTCCTTTAT CGACGGTGCC AACCGCCAGG AACTGCAAAC CTACGGCGGC
AGCGCCAACC TGACCTGGGA TCTGGGCGAT ATCGCGCTGC ACTCGATCAC CGCCTACGAA
GGCATCGGCA AGTACTACAG CCGCGGCGAC ATCGACGGCG GCTTCGGCGC AGTGTTCGCA
CCGCCGTCGG GCCCGGGCGT GATTCCGTTC CCGGTGGAAA CCGCCGGTGG CATCAAGAGC
CTGGACCAGT ACAGCCAGGA AGTGCGTGCG CAATCGCAGT ACGAAGGCCC GCTCAACTGG
CAGGCCGGTC TGTACTACTT CCATGACGAT GTGGAAGGCG AGAACTACAC CTATAACACC
CTCAGCGGTG GCGATCTGGC CAGCTATCAG CTGACCCGCC AGCGCAATAC TTCGTGGGCG
GCGTTCGGGT CGTTGAACTA CGCGGCCACC GATCGTTTGA ACCTGCGCGC CGGCATCCGC
TACACCTACG ACAAGAAGAC CTTCGACGCG CTGGCGCTGG ACCGGGTCAC CCTGGTCGAA
CCGTCCAGCG GCGAGACCGA CAACTCCAAG GTCACCGGCG ATCTGGCGGC AACGTTCTCC
ATCAACGACG ACGTCAATGT GTACGCACGT GCGGCACGCG GCTTCCGTGG TGCCAGCTTC
GGCGTGCCGT CGGGCACCGC GCCGCTGACC GTGGCCGAGC CGGAAACGGT GGATTCGTTG
GAGGTCGGCA TCAAGTCGGA CCTGTTCGAC AACCGCGCGC GCCTGAGCGT CGACGTCTAC
GATTTCCGGG TGAAGAACCA GCAGCTCACC GCAGTCGGTG GCGCGTCCAA CGACGTGCGT
CTGCTCAACG CCGACAAGAC CAAGGCGCGC GGCGCCGAGT TCGATTTCGA AGCCTTGCTC
ACCCAGAACC TGCGCGTCAC CGCCGGTGGC GCCTATAACT GGACCCGCAT CGACGACCCG
AACCTGTCGG TGGGCATCTG CCGCACCTGC ACCGTGACCG ACCCGATCAA CGCGGCCGGC
CGCGCGGTGA TCGACGGCAA TGACCTGCCG CAGGCCGCCA AATGGATGGC CAATGCCACC
CTGCGTTACG GCATCCCGAT GGGCAACGAC GGCGAGCTGT TCTTCTACAC CGACTGGTCG
TACCGCAGTG AAGTGAACTT CTTCCTGTAC GATTCCAAGG AATTCACCGG CCAGCCGCTG
GTCGAAGGTG GCGCCAAGAT CGGTTACAAC TGGGGCGCGG GTGCGTACGA GTTGTCGGTG
TTCTGCCGCA ACTGCACCAA TCAGATCCGC GTGACCGGTG CGATCGACTT CAACAACCTC
ACCGGCTTCA TCAACGACCC GCGCATCGTG GGTGCGCAGT TGCGCGCCAA CTTCTGA
|
|---|
| Protein sequence | MSASRSLKIS ALAVAVVSLL PLAAAAQQAP SDDGVVRLDA VKVTVERRSE DSKDVPVSAS
VLRPEFLDAI STSGSDIRVL AGKAPSLNIE SSNGRVFPRV YIRGYGNTDF NTYASQPVSL
IYDDVVQENV FLKGFPIFDL EGLEVLRGPQ GTLFGRNTPA GVVKFNSVKP TIGANDGYAS
LSYGTYGTMT LESGLSIAMG DHWAARLSTL GQRRDDWVEN RDGRDLEGYT DSAVRLQLLY
QASDDFSALF NAHARHLDGT ARLFRANIIQ PGTNQLVEGF DPENSFIDGA NRQELQTYGG
SANLTWDLGD IALHSITAYE GIGKYYSRGD IDGGFGAVFA PPSGPGVIPF PVETAGGIKS
LDQYSQEVRA QSQYEGPLNW QAGLYYFHDD VEGENYTYNT LSGGDLASYQ LTRQRNTSWA
AFGSLNYAAT DRLNLRAGIR YTYDKKTFDA LALDRVTLVE PSSGETDNSK VTGDLAATFS
INDDVNVYAR AARGFRGASF GVPSGTAPLT VAEPETVDSL EVGIKSDLFD NRARLSVDVY
DFRVKNQQLT AVGGASNDVR LLNADKTKAR GAEFDFEALL TQNLRVTAGG AYNWTRIDDP
NLSVGICRTC TVTDPINAAG RAVIDGNDLP QAAKWMANAT LRYGIPMGND GELFFYTDWS
YRSEVNFFLY DSKEFTGQPL VEGGAKIGYN WGAGAYELSV FCRNCTNQIR VTGAIDFNNL
TGFINDPRIV GAQLRANF
|
|---|
| |