| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_02717 |
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| Symbol | prpR |
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| ID | 6307914 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | + |
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| Start bp | 4516587 |
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| End bp | 4518272 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642641643 |
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| Product | propionate catabolism operon regulatory protein PrpR |
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| Protein accession | YP_001915481 |
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| Protein GI | 188578552 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR02329] propionate catabolism operon regulatory protein PrpR |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGATTCTTT TAGACCTCGC CGCTCCAGAT GTTGCAAGTG CGCAACGCTT GATTCACTAT
GAAACATCAC TGAAACGTGG CAACTCGATG CGCAGCCCTG CCACTCCGGA AACCGCAGGC
GCCGCCCTAC CCGTCATCTG GACCGTCAGC GTCTCGCGCC TGACCGGCTT ACTGGCCGAT
GTCATTCCCG AGTTCGACCA GCGCGCGCGT ATCGAGCAGA TCAACCTCGG CTTTGCCGAA
GCAGTGGAGG TCATCGGCCT GCGCCTGCGC CGCGAACGCT GCGACGCGCT GGTGGCCGGC
GGCTCCAATG CGGCGTACCT GCGCAGCCGG CTGGCGCTGC CCTTCGCACA CATCCAGGCC
ACCGGGTTCG ATCTGATGGA AGCACTGGCG CGTGCGCGCC GCATCGCGCC ACGCATCGGC
GTGGTCACCC ACGCCAGCGA TGTGCCGTCG TTTCGCGCCT TCCAGCACAG CTTCGATCTG
GATATCGAAC ACCGCCGCTT CGTCACCGCC GAAGACGCAC GCGATTGCAT TGCCGACCTG
CGCGCCAGCG GCATCCAGGT CATCGTCGGC ACCGGCATGG CGATCGATTT CGCCGAACAA
GCTGGGCTGC CCGGTGTGCT GCTGTATTCG GCCGATTCGG TGCGCCAGGC GCTGGAACAG
GCCATCGCCC TGGGCGCCGC CCCAAGCACC GATGACCTCG CCGGTCGCAG CGCCACGCGC
CGAGCACGAC GTGCCGACGC CCTGCTCGGC GAAGACAGCG CGATGCTGCA GGTGCGCGAG
TTGGTGCAGC TATACGCACC GCATGCCGGC ACCGTGTTGA TCAGCGGCGA GACCGGCACC
GGCAAGGAAC TGGTTGCACG GCAACTGCAT GCCGGCAGTC GCCGCCGTGG CCGCTTCGTG
GCGATCAACT GCGGCGCCAT CAGCGAATCG CTGCTGGAAG CGGAACTGTT CGGCTACAGC
GATGGCGCTT TCACCGGCGC GCGCCGCGGC GGCCACACCG GCCTGATCGA AGCAGCGCAG
GACGGCACGC TGTTCCTCGA CGAAATCGGC GAGTTGCCGA TGGCGCTGCA AACACGGCTA
TTGCGCGTCT TGGAAGAACA CGAAGTGCTG CGCGTCGGCG CAACCGTGCC CATTGCGGTC
GACGTACGCG TGGTCGCTGC CAGCCTGCAG GAGCTGCAGC AGTTGGTCGA ACAAGGCCGC
TTCCGCCGCG ATCTGTTCTA TCGCCTGGCC GCACTTCGCA TCGCACTACC GCCATTGCGC
AGTCGGCACG ACGAGATCGC GCTGTTGCTT GCGCATTATT TCCAGCAACT CGGCAACATC
GCATCGCCGT TGTCGCCCGC CGCATTGCAA CGCCTGCAAC AGCACAGCTG GCCCGGCAAC
GTGCGCGAAC TGCGCAACCT GGTCGAACGT CTATGCATTC ACTGGAAATC CCAACCGCAC
GACAGCCTCA GCCTGGAGCA ACTCGAACGC TGGGCACCGG AATTATTCGA TACGCATTTC
GGCACCCACG AAGCACCACG TGAGCTTGCC GATTTGGCGA CCTCTCGCCT GCAGCTCACT
GCCACCGCAG TCCGCGCAGC GCTCGACCGC GCCAACGGCA ACCGCGCCCT CGCTGCACAG
GCACTCGGCG TCTCGCGCAC CACGTTGTGG CGCTGGATGC AGGCACAGGC GTCGGCGCGT
ACGTAA
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| Protein sequence | MILLDLAAPD VASAQRLIHY ETSLKRGNSM RSPATPETAG AALPVIWTVS VSRLTGLLAD
VIPEFDQRAR IEQINLGFAE AVEVIGLRLR RERCDALVAG GSNAAYLRSR LALPFAHIQA
TGFDLMEALA RARRIAPRIG VVTHASDVPS FRAFQHSFDL DIEHRRFVTA EDARDCIADL
RASGIQVIVG TGMAIDFAEQ AGLPGVLLYS ADSVRQALEQ AIALGAAPST DDLAGRSATR
RARRADALLG EDSAMLQVRE LVQLYAPHAG TVLISGETGT GKELVARQLH AGSRRRGRFV
AINCGAISES LLEAELFGYS DGAFTGARRG GHTGLIEAAQ DGTLFLDEIG ELPMALQTRL
LRVLEEHEVL RVGATVPIAV DVRVVAASLQ ELQQLVEQGR FRRDLFYRLA ALRIALPPLR
SRHDEIALLL AHYFQQLGNI ASPLSPAALQ RLQQHSWPGN VRELRNLVER LCIHWKSQPH
DSLSLEQLER WAPELFDTHF GTHEAPRELA DLATSRLQLT ATAVRAALDR ANGNRALAAQ
ALGVSRTTLW RWMQAQASAR T
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