Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PXO_02696 |
Symbol | cas |
ID | 6307936 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
Kingdom | Bacteria |
Replicon accession | NC_010717 |
Strand | + |
Start bp | 4539663 |
End bp | 4540697 |
Gene Length | 1035 bp |
Protein Length | 344 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642641665 |
Product | crispr-associated protein Cas1 |
Protein accession | YP_001915502 |
Protein GI | 188578573 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1518] Uncharacterized protein predicted to be involved in DNA repair |
TIGRFAM ID | [TIGR00287] CRISPR-associated endonuclease Cas1 [TIGR03640] CRISPR-associated endonuclease Cas1, DVULG subtype |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.512018 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGCCGCC AACTCAACAC ACTGTATGCC ACCACAGACG GTGCCTGGCT GCGCAAGGAC GGCGCGAACA TCGTCATGGA GGTGGAGCGG CAGGAGCGCG CACGCCTGCC CGTGCACATG CTCGAGAGCC TGGTCTGCAT CGGCCGCGTC GCGGTGTCGC CGCAACTGCT CGGCTTCTGC AGCGAACACG GCATCAGCAT CTGCTACCTG ACGCCGCAGG GGCGTTTCCT GGCGCGGGTC GAAGGGCCGG TCTCCGGCAA CGTGCTGCTG CGGCGCGCAC AGTACCGGCG CAGCGACGAT CCCGCAGGTT GCGCCGCCAT TGTCCGCCAC CTGCTGGCCG GCAAGATCCA CAACCAGCGC GCGGTCTTGG CGCGCGGCTG GCGCGATCAC GGCGACTGCC TGACCGACGT GGCCGCCTTC CAGCACTCTT TGAAGCGGCT CAAGCGTATC CCACAGCGCG TTCTGGTCGA GACCGACGTG GACGTGCTGC GCGGCCTGGA AGGCGAGGCG GCGCAGTCCT ACTTCGGTGT GTTCGGACAG CTGGTGCGTG CCGACAAGCC ACTTCTGCGC TTCGGCGGAC GCAATCGCCG CCCTCCGCGC GACGCCTTCA ATGCCCTGCT CTCCTTCCTC TATACCCTGC TCACACACGA CTGCCGCTCC GCCCTGGAGT CGGTCGGCCT GGACCCGGCG GTGGGCTTTC TGCATCGCGA CCGGCCCGGG CGACCGAGCC TGGCGCTGGA CTTGGCCGAA GAGTTCCGCC CCTTGCTCGG CGAACGTCTG GCACTTTCGT TGATCAATCG CCGGCAATTG AACGAACGCG ACTTCCAGGT GTTCGACAAC GGCGCGGTCC TGCTCAAGGA TGACTCGCGT AAGACCGTGC TGATCGCCTA CCAGGAGCGC AAGCGCGAAC AACTGCAGCA TGCCTTTCTG GGAGAAAAGG TCGACATCGG CTTGCTACCG TTCGTCCAGG CGCAGCTGCT TGCGCGGCAT CTGCGCGGGG ACCTGGATGG CTACCCGGCG TTCTTCTGGA AGTAA
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Protein sequence | MRRQLNTLYA TTDGAWLRKD GANIVMEVER QERARLPVHM LESLVCIGRV AVSPQLLGFC SEHGISICYL TPQGRFLARV EGPVSGNVLL RRAQYRRSDD PAGCAAIVRH LLAGKIHNQR AVLARGWRDH GDCLTDVAAF QHSLKRLKRI PQRVLVETDV DVLRGLEGEA AQSYFGVFGQ LVRADKPLLR FGGRNRRPPR DAFNALLSFL YTLLTHDCRS ALESVGLDPA VGFLHRDRPG RPSLALDLAE EFRPLLGERL ALSLINRRQL NERDFQVFDN GAVLLKDDSR KTVLIAYQER KREQLQHAFL GEKVDIGLLP FVQAQLLARH LRGDLDGYPA FFWK
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