| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_01927 |
|---|
| Symbol | |
|---|
| ID | 6307384 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | + |
|---|
| Start bp | 3992332 |
|---|
| End bp | 3993528 |
|---|
| Gene Length | 1197 bp |
|---|
| Protein Length | 398 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642641125 |
|---|
| Product | diaminopimelate decarboxylase |
|---|
| Protein accession | YP_001914973 |
|---|
| Protein GI | 188578044 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCTGC GCATCGACAC CGCCGCGGCG CTTGCGGCCT TGCCGCACGT GCGCGACCGC
TGCGATGGCC CGATCTGCGC ATACGTCTAC GACCTGGCGG CATTGGACGC ACACGCGGCC
TGGATGCGCG CACAGCTGCC GGCGCAGTGC GAGCTGTTCT ATGCAGCAAA AGCCAACGCA
GAACCGCCGA TTCTGCAAAC GCTGGCAGCG CATGTGGATG GCTTCGAAGC CGCATCCGGC
GGCGAACTCG CCTGGCTGCA TGCGCAGCAA CCGCAGGCAC CGTTGTTGTT CGGTGGCCCG
GGCAAACTCG ATACCGAGCT CGCCCAGGCA GCCGCCCTGC CCGACTGCAC GGTGCATGTG
GAAAGCCTGA GCGAACTCGA ACGCCTGGCG GCAATTGCCG CGCACGCCGG CCGCTGCGTG
CCGGTGTTCC TGCGCATGAA TATCGCCGTA CCCGGCGCGC AGAGCACACG CCTGATGATG
GGCGGGCATC CCTCGCCGTT CGGTCTGGAC CCGGACGATC TGGATGCAGC GATGCAGCTG
CTGCGGGCAA GCCCATCGCT GCGCCTGGAA GGCTTCCACT TCCATCTGAT GTCGCATCAA
CGCGATGCCG CTGCACAACT GCAGCTGATC GCCGCTTACC TGCGCACCGT GCAGCGGTGG
CGGCATACCT ATGCGCTGGG CCCATTGCGG GTCAATGCCG GCGGCGGCTT CGGGGTGGAC
TATCTGGCGC CGGAATCGTC GTTCGATTGG GCCGGCTTCT GTGCCGGGCT ACCGGCCCTG
CTGGGCGAAC ATGGCACAGA CCTGCGCCTG CGCCTGGAAC CGGGCCGCTA TGTCAGCGCC
AGCTGCGGCT GGTATCTGAT GGAAGTGCTG GATCTCAAAC GCAGTCACGG CGCCTGGTTT
GCGATCGCAC GTGGCGGCAC CCACCACTTC CGCACCCCGG CCGCACAGGC GCACGATCAC
CCATTCCGTG TGTTGCGTGG GGCACGTACG CCGGTGCTGC GCGATACGCC GGTCACCCTG
GTCGGGCAGT TGTGCACACC CAAGGATGTG CTGGCACGTG ATCAATCCGT CGCCGCGCTG
GCACCGGGTG ATTGCCTGGC TTTTCCGCTG GCCGGTGCCT ATGCATGGAC TATTTCGCAC
CAGCACTTTC TGATGCATCC GGCACCGCAG ATGGTGTTTT TGCCAGCGAA GAAGTGA
|
|---|
| Protein sequence | MSLRIDTAAA LAALPHVRDR CDGPICAYVY DLAALDAHAA WMRAQLPAQC ELFYAAKANA
EPPILQTLAA HVDGFEAASG GELAWLHAQQ PQAPLLFGGP GKLDTELAQA AALPDCTVHV
ESLSELERLA AIAAHAGRCV PVFLRMNIAV PGAQSTRLMM GGHPSPFGLD PDDLDAAMQL
LRASPSLRLE GFHFHLMSHQ RDAAAQLQLI AAYLRTVQRW RHTYALGPLR VNAGGGFGVD
YLAPESSFDW AGFCAGLPAL LGEHGTDLRL RLEPGRYVSA SCGWYLMEVL DLKRSHGAWF
AIARGGTHHF RTPAAQAHDH PFRVLRGART PVLRDTPVTL VGQLCTPKDV LARDQSVAAL
APGDCLAFPL AGAYAWTISH QHFLMHPAPQ MVFLPAKK
|
|---|
| |