| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_01578 |
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| Symbol | hrpA |
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| ID | 6306733 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | - |
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| Start bp | 3333464 |
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| End bp | 3337585 |
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| Gene Length | 4122 bp |
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| Protein Length | 1373 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642640486 |
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| Product | ATP-dependent helicase HrpA |
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| Protein accession | YP_001914343 |
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| Protein GI | 188577414 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.56413 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGCTA TCGACTCCGA CCTTGCCAAC ACCTTGCGTG AGCGCCGCCG CGCCGTGGAT
GGCGCGATGA GCCACGACCG TGGCCGCTTG CTGGGCCTAT GGTCGCGCTG GCAGGGCAAG
CCGGGCAACC CGCAGGTACG CGATGCGTTC GAGCAGGCGC TGGCGGCATC GCAGGCGCAG
CGCCAGGCGC GGGCCGAGCA GCAGCCGGCC ATCACGCTGG ACAACCAATT GCCGATCGCG
CGCGAGGCCG AGCGTATCAT CGCGTTGATC CGTGATCATC AAGTGGTGGT CATCGCCGGC
GAAACCGGCT CGGGCAAGAC CACCCAGCTG CCCAAGCTGT GTCTGGCGGC AGGGCGCGGG
GCCGCCGGGA TGATCGGTTG CACTCAGCCG CGCCGGATCG CCGCGCGTGC GGTGGCTGCG
CGCGTGGCGG AAGAGTTGAA GACGCCACTA GGTACCATCG TTGGCTTCCA GGTGCGCTTC
ACTGACCGGG TCAGCGAGCA GTCGCGCATC AAGTTCATGA CCGACGGCAT CCTGTTGGCG
GAAATCGCCA GCGACCGTTG GCTGTCGGCC TACGACACCA TCATCGTGGA CGAGGCGCAC
GAGCGCAGCC TCAACATCGA TTTCCTGCTG GGCTATCTCA AACAGTTGCT GCACAAGCGC
TCCGATCTCA AGTTGATCGT CACCTCGGCC ACCATCGATA CCGAGCGCTT CGCACAGCAT
TTCGACAATG CGCCGGTGAT CAATGTGGAA GGCCGCACCT TCCCGGTCGA AGTGCGCTAC
CGCCCGCTCG AAGGCGATAC GGGCGACAGC GACGACGGCG AACACAGCAG CGGCCGCGAC
GGCGAGCGCA GCGTCAACGA TGCGATTGTG GCGGCCATCG ACGAGATTAC CCGCATCGAC
CCGCGCGGCG ATGTGCTGAT GTTCCTGCCG GGCGAGCGCG AAATTCGCGA TGCGCACCAG
GCGTTGGAAC GGCGCAAATA CCGAGAGACC GAAGTGGTGC CGTTGTACGC GCGGCTGTCG
GCGGCCGATC AGGACCGCGT GTTCAATCCC GGCCCGCGGC GACGCCTGGT GCTGGCCACA
AACGTGGCCG AAACCTCGTT GACCGTGCCG CGCATTCGCT ATGTGGTGGA TCCGGGGCTT
GCACGCGTCA AACGCTACAG TCCGCGCCAG AAGCTGGACC GTCTGCATAT CGAGCCGATC
TCGCAGGCCA GCGCCAACCA GCGCATGGGC CGCTGTGGGC GTATCGCCGA GGGCATTTGC
TACCGGCTGT ATGCCGAAGC GGATTTTGCC GCGCGCCCGG CGTTTACCGA CCCGGAGATC
CGGCGCTCGT CGTTGTCCGG CGTGATCCTG CGCATGCTGC AGCTGGGGCT GGGCAGAATC
GAAGACTTCC CGTTCCTGGA AGCGCCCGAC GAACGCGCGG TGGCCGATGG CTGGCAACAG
CTGCTGGAGT TGGGCGCGAT CGATGCGCAG CGGCGTCTGA CCGCCACTGG CTGCCAGATG
GCGCGCCTGC CGGTGGACGT CAAGCTGGCG CGCATGCTGG TGGCCGCCCA GCAGCACGGT
TGTCTGCGCG AGATGATCAT CATCGCCGCA TTCTTGGGCA TCCAGGACCC GCGCGAGCGC
CCGGCGGAAG CGCGCGAGGC TGCCGATAAC GCGCACGCGC TGTTTGCCGA TGTGCGCTCT
GAATTCGTGG GCATCCTGCG CTTGTGGGAT GCGTACCGGC AGGTGCATGA AGATCTCACC
CAGTCCAAGT TGCGCGACTG GTGCAACCGG CATTTCCTCG GCTTTTTGCG CATGCGCGAG
TGGCGCGAGT TGCATCGACA GCTGCGGCTG CTGTGCGAGG AGCTCGGCTG GAGCGAAGAA
CCGGCCAATG TGATGCTGGC GCCATTGCTG GCCGGTGCCA GCGCGCCTGC CCGCGAGGAC
GGCCATAACG CCAACCGGCC CACGCGCGGC CAGTTGCACC GTGCCGCGCG ACTGGCGCGC
GAAGGCAAGC CGGATCCGAA CACGGCGCCT GTGCAACACC CGCCTGCTGC GACGAACAAG
CAGGCCGAGC CTGCCGAAGC ATCTGCGCTT AGCAGCGAGC GCGAACGTGC GGCGGCGTAT
CAGTCGTTGC ATCGCGCGCT GCTGGCGGGC CTGCCGACGC AGATCGGTCA TCGCACCGAG
AAGGGCGATT ATCTGGCTGC GCGGCAACGC CGCTTCGTGC CGTTTCCGGG CTCCGCATTG
GCGCGCAAGC CGCCGCCTTG GATTGTGGCT GCCACGTTGC TGGACACGCA AAAAGTATGG
GGCATGACCA ATGCCGCGAT CGAGCCGGAT TGGGCCATCG CCGAGCTGCC GCATCTGCTG
GCGCGCAAGC ACTTCGACGC GCATTGGTCG CGTGCGCAGG GGCAGGTGGT GGCGTCGGAA
CAGATCAGCC TGTTCGGGCT GGTGCTGGCG CCGAAAAAGC CGGTGCATTT CGGCAAGATC
GACCCAGCCG CGGCGCATGA CCTGTTCGTG CGCCAAGGCC TGGTGACCGG CGAAATCAAC
ACGCGTGCCG CATTCGTGGC CGACAATCTC AAGGTGCTAG AGCAGGCGCG TGAAGAGGAG
GCCAAGCTGC GTCGTGCCGG CATCGTTGCC GACGAAGACT GGCAGGCGCG CTGGTATCTG
GATCGCATTC CAGCCGAGCT GCATTCGGCC AGTGGTCTGG ATGCTTGGTG GAAGAGCTTG
CCGCCAGACA AGCGCCGCAG CCTGCATTGG TCGTTGAACG ATGTGCTGCC GGGCGAGGGC
TGCGAAGCCG ATCGCTTTCC GAAATATTTC CCACTCGGCG ATGCGCGCTT GCCGTTGCAT
TACCGCTTCG AGCCGGGGGC CATCGACGAC GGCGTGACCC TGGATGTGGC GTTGCACCTG
CTCAATGCGC TGGATCCGGC GCGCCTGTCG TGGCTGGCGC CGGGCTTCGT CGCCGACAAG
GCATCTGCGT TGATTCGCAG CCTGCCCAAG GCGCAGCGCC GCAACTATGT GCCGGCACCG
GATTTCGGAC GTGCGTTCTA CGAGGCGTTT AACGTTGCCT CGGCCGACGA TATCCGCGGC
GAGCTGGCGC GCTTTCTGAC CAAGGCCACC GGTGCGCATG TGGCAGCGCT GGATTTCGAT
GAGCAGGCGC TGGACACGCA TTTGCTGATG AACCTGCGCG TGCGCGACGA CGACGGCAAG
GTGCTGGACG AGTCGCGCGA TCTGGACGGG CTGCGCGCGC GCTTTGGCGA GCGTGCCGGG
CAAGCATTCG CCGCGCGGGC CGGACGCGCG CTGGCCGCCG AGGGCCTGCG TGATTTTCCG
ACAGCGCCGA TTCCCGAGCA GGTGGCCGGC GAGGCCGGCG TGCCGGCGTA CCCGGCGCTG
GTGGATCAGG GCGACAACGC GGCGCTACGC ATCTTCGCCG ACCGCAACGA GGCTGCGCGG
GCGCATCCGC GCGGCGTGCG GCGCTTGCTG GAAATCGCAT TGGCCGACAA GATCAAACAG
GCGCGCAAGC AACTGCCGGT GTCGCCCAAG ACCGGGCTGC TGTATGCGGC CATCGAATCG
CAGGAACGCC TGCGTGGCGA TCTGGTCGAT GCCGCGCTCA ATGCCGTGCT GGCCGATGGC
CTGGGCGCCA TTCGCGACCC CGGCGCATTC GCGCAGCGCC GCGACGATGC GATCAAGCGG
CTGTTCGGCG AAGCGATGGA GCGCTTGACG CTGGCCGAAA GCATCCTGGG CGCGGTGGCC
GAACTCAAGC CGTTGCTGGA AGCGCCGTTG ATGGGCTGGG CGCGCGGTAA TCTGGACGAC
ATGGAGCAGC AACTGCGCGC GCTGGTGCAT GCAGGCTTCC TGCGCGACAC GCCGGCCGAC
GCATTGGCCA ATTATCCGCG CTACCTCAGG GCGATGATCC TGCGCACCGA GCGCGCAAAG
CGCGATCCGG CACGCGACCA GGCGCGCATG CTCGAGCTCA AACCGTTCGT GGATGCAGTG
GAAGCCGCCG CCGCGCACGG TTTGCAGAAC CGCGAAGACT GGCAAGCGCT GCGCTGGGAT
CTGGAAGAAC TGCGCGTGTC GGTGTTTGCG CAGGAGCTGG GTGCAAAGTC CGGCGTCTCG
GCGAAAAAAC TGTCGCAACG TGTCGCTGCA CTGCGCAGTT GA
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| Protein sequence | MSAIDSDLAN TLRERRRAVD GAMSHDRGRL LGLWSRWQGK PGNPQVRDAF EQALAASQAQ
RQARAEQQPA ITLDNQLPIA REAERIIALI RDHQVVVIAG ETGSGKTTQL PKLCLAAGRG
AAGMIGCTQP RRIAARAVAA RVAEELKTPL GTIVGFQVRF TDRVSEQSRI KFMTDGILLA
EIASDRWLSA YDTIIVDEAH ERSLNIDFLL GYLKQLLHKR SDLKLIVTSA TIDTERFAQH
FDNAPVINVE GRTFPVEVRY RPLEGDTGDS DDGEHSSGRD GERSVNDAIV AAIDEITRID
PRGDVLMFLP GEREIRDAHQ ALERRKYRET EVVPLYARLS AADQDRVFNP GPRRRLVLAT
NVAETSLTVP RIRYVVDPGL ARVKRYSPRQ KLDRLHIEPI SQASANQRMG RCGRIAEGIC
YRLYAEADFA ARPAFTDPEI RRSSLSGVIL RMLQLGLGRI EDFPFLEAPD ERAVADGWQQ
LLELGAIDAQ RRLTATGCQM ARLPVDVKLA RMLVAAQQHG CLREMIIIAA FLGIQDPRER
PAEAREAADN AHALFADVRS EFVGILRLWD AYRQVHEDLT QSKLRDWCNR HFLGFLRMRE
WRELHRQLRL LCEELGWSEE PANVMLAPLL AGASAPARED GHNANRPTRG QLHRAARLAR
EGKPDPNTAP VQHPPAATNK QAEPAEASAL SSERERAAAY QSLHRALLAG LPTQIGHRTE
KGDYLAARQR RFVPFPGSAL ARKPPPWIVA ATLLDTQKVW GMTNAAIEPD WAIAELPHLL
ARKHFDAHWS RAQGQVVASE QISLFGLVLA PKKPVHFGKI DPAAAHDLFV RQGLVTGEIN
TRAAFVADNL KVLEQAREEE AKLRRAGIVA DEDWQARWYL DRIPAELHSA SGLDAWWKSL
PPDKRRSLHW SLNDVLPGEG CEADRFPKYF PLGDARLPLH YRFEPGAIDD GVTLDVALHL
LNALDPARLS WLAPGFVADK ASALIRSLPK AQRRNYVPAP DFGRAFYEAF NVASADDIRG
ELARFLTKAT GAHVAALDFD EQALDTHLLM NLRVRDDDGK VLDESRDLDG LRARFGERAG
QAFAARAGRA LAAEGLRDFP TAPIPEQVAG EAGVPAYPAL VDQGDNAALR IFADRNEAAR
AHPRGVRRLL EIALADKIKQ ARKQLPVSPK TGLLYAAIES QERLRGDLVD AALNAVLADG
LGAIRDPGAF AQRRDDAIKR LFGEAMERLT LAESILGAVA ELKPLLEAPL MGWARGNLDD
MEQQLRALVH AGFLRDTPAD ALANYPRYLR AMILRTERAK RDPARDQARM LELKPFVDAV
EAAAAHGLQN REDWQALRWD LEELRVSVFA QELGAKSGVS AKKLSQRVAA LRS
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