| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_01324 |
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| Symbol | pilY1 |
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| ID | 6306991 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | - |
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| Start bp | 3572397 |
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| End bp | 3576380 |
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| Gene Length | 3984 bp |
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| Protein Length | 1327 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 642640738 |
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| Product | PilY1 |
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| Protein accession | YP_001914589 |
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| Protein GI | 188577660 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.338969 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCATCTTC GTCGGCGTCG ATTGACTCCA TCTTCAAGCT CTGAGGCCGT CTGCATGTCT
CGTCGCATTC TCAAAACGGC TATTGCCTCC GTCGTCGTCC TGATTACGAT GGGCGGTTAC
TTTGTCTACA ACTTGATCGC GGCGCAGGGC CAAGAAAAGT TGGTGCAGGC CCCACTTAAT
AATGGCACTC CGGTCCCGCC GGCATTCATC GTGGTGGTGG ATGATTCGAA CTCGATGACT
TTCGAGCGTA TTTTCAAGGG CGGCGATGGG CGGCTTCAAT GGAATACTAG TAACTCAAGT
TTTTTTAAGG CTGACGGAAG TTTCTTTAAT AGTGAGGATA ACTGTCTTCG TGATTCTCAG
GATTGTTATG TTTACTTATT TCCTTTTCCG GATTATAACT CGGCTTTTCC TATTGGCGTT
GCTCTCCCTC CGCTGGATCA ATTTGGTTTC GCAAGATCGC CCACATATAA TGCAAATTAT
TTTGATCCTG CGATCCAGTA CGATCCGTGG ACCAAGGCTG ATCGGACCTT GTGGAAGCAG
GCTGATTTTA CTGCCGCACG GGCGGATTCG CGCGATCCCG CTGTTTATGG CGACGCTAAT
GGCCAAATAA GAATGAGTAA GTATGGCACG ATCGTCGGGC TTGGTCAGCC GAGGGAGGTG
ACTAGCGATA ATTCATTCCG GTTCGTGATT GGTATGACGA TTCCCTCTGG GACGCGATAT
CGGACGACAG AACCTTCCAC TGCCAGGATT TGTAATTCCA ATGGTTTCGA TGGAGTGCGG
GGTACTGGTG GGGCGTGGTC AACGATTACC TCCAATGCCC ATGTTGGTGC CAATTGTTCT
GTGCAAATCT CCTATATTCC TGCGACATTT TACTTGCCTG TTGCTGCTCC GGCACCGACA
GGATACAATT CAAATGATGT TAATAGGCCG ATTATTGCAA ATGCTTGCGG GCCTGGTTGC
AATATGCGGC GATATCAGAT TTTGAAGTCA AATTACTTGA CCACTACGGA TTTTAATAAC
GCATCAAATA ACTTTGCCAA TTGGTTCCAA TATCATCGTA ATCGTATTCT TTCCATTATT
GGTTCCGAGT CACGGACATT GGCCAATGTC GATAATATGC GGGTTGGTTA CTTTACGATC
AATAATCGTA AGCAGCCGAC CATGTATGAC ATCGGCGACG ATACTTCGCG TAAAACGTTG
TTCGAGCAGA TCTATCACCT CATACCACTT GGCGGTACGC CCAATCGTGT GGCTATCGAG
TATTTGGGCC AGCAGTTCAG GCGAACCGAT TTCGGAGCGC CGGTGTTGCG TGCATGTCAA
AAAAACGGCG GCATGCTATT TACCGATGGT TATACGAATC CCAATGCCCA AGCCTCTCCC
AATGTTCCTA GTGCGACGTA TGGAAATGCC GACTCGACAG GGACTGTGAA TTTTCCTGCG
TTGCCATTTG CCGACGGCTA TAGCGAAACG ATCGCTGACA TCGCTGCCAG CTATTATTCT
GGTGTAAACA CGCCTTTGGT GACTGGGCAG GGTTTCACCG GCGGCTTGGT GCCTGTTGAC
GAAAAGTGCG CAACCCTCGA CAAGACATCC GCCGACTGGA AGCGTTTGGA TTGTCAGAAA
GATCTGCATA TGAACTTCTA TGCGATCACC TTGGGCGCAC AGGGAAGTAT TTACGAAGTC
AATCAGGCGG CCACCAGGGA CCCTTATGCC AATGCTCCCA ACTGGAACGC TGATGGCGAT
CCACTGGTGA ATGATGATGG CCGCGTGATC GATGAGCTCT GGCATGCCAC CATCAATAGC
CGTGGTCAGT TCATCAATGC CAAGAGCCCT AATGAAGTGA CCGCTGCGAT GCGTCGAGTG
CTGTCGGCCG CCAGTGCTGC CAACTCGCCG TCTGGCACGC TGGCGTTGAC GGGTGCGCGC
ATCGGTGCAG GCTCGTTGAC CGTGACTCCT GAGTACCAGA TCAGCAACAA CGGCACGGAT
TGGTCCAGCA AGCTGAAGGC CAATCAGGTC TCGGTTGATC CGGATACGCG CGAAGCGCGC
TTTACTCCGC TCTGGGAGGC ATCTGCACAG ATGCCTGCAG CCAGTGCACG CAATGTTTAC
TTCAACGATG GCAGTAATGT GCGAAAATTC GATGGCACGA GCATCAGCTT AAGCGGTCTA
TGTGGTTTGT CCGCGACGTT GTATCCCAGT CAATCGCTCT GCTCGCAGTC GGACCTGACC
AGTCTTGGTG CAACCGCCGC GACTGCCGCC AATTATCTAC TGGGTGACCG TAGTGGCGAA
GTTCAGCAGG GTGGCAAGTT CCGCGACCGG AGCACCGTTC TCGGCGATAT CGTCAATTCC
ACCCCGGTGA TCAGTGCACC GGTCGACGAC TATGGATATC GTGGCTTGGG CGGTACGCTG
GGGACTAGCT ATACCGACTA TCTCAATAGC AAGCGCAATA AGGCCTATAT GGTGTACGCA
GGGGCCAATG ACGGCATGCT GCATGCCGTC GATGGCGGCA TCGACAGCAC TGGTGCCGTC
ACCGGAGGTG GTGGCCGTGA GCGCTTTGCG TATGTGCCCG CGACGTCATA TGGCCACATG
GGAAATCTGT TGCTGCCCTA CCAAGTCAAT AAGTCATCTA CGTTGCCCAA TTTTGATCAT
CGTTACTTCG TCGATGGTCC GATTGCGGTA GGAGATACGT ACTACAACAA CGCCTGGCAG
ACGACGCTGG TCGGCACCAC GGGTGCGGGT GGTCGCGGTG TCTTCGCATT GGACGTCACC
AATCCGGCAA GCTTCGGCGC CAGTAGCCGT CTCTGGGAGA TCAATGATCT CAGTGGCGAT
GCCACTGTGC GCGCGAACAT CGGGCATGTG CTCGGCAAGC CCGTCATCGT TCCGGTGCGC
GCGGCCAATG GAACGGTCAG CTGGAAGGCG ATCTTCGGCA ACGGCTATGC TAGCGCCAGC
GGCAAGGCGG TGTTGTTCGT GGTCGATATC GGGACCAGTT CCACGCCGAC GATTCATATG
ATCGAGGCAA CGGAGCCGGC AGGCACAACA GCGGCAACCA AAATCAGTGG TAACAACGGA
CTCGGCAATC TCATTGTGTT GGACCGTATC GATAATCTGA CGATCGACCC GACCACCAAC
AAGCCGGCTC GCACGCGCGA TGGATATGCT GACACGGTCT ATGCGGCCGA TCTTCGTGGA
GCGATTTGGA AGTTCGATCT CACATCAACC GCAACATCAG TGACCGTTCC CGCGTTCACG
ACAGGGACTT ATTCCGAAGG TGGTTTGAAC TACCGTCAGC CAATCACCGG TGGACTGCAG
GCCGCTTCCG GAGAGAACGG TGGAGTTCTG GTCTTGTTCG GCACCGGTAG TTTTTCGTTT
GATAAAGATA ACCAGGCGAG TTCCGCGCTG CAGACGCAAA GCCTGTATGG TTTCACGGAT
AAGGTGGATG GGGTGATCTC CACAACCCTA ACCAGGGCGA ACCTGACGCC ATTTTCTGTC
AGCAGTGGTA CTTCTGGTAC TACTCGATCC CTGCAGCAAG GCAATGCCCC CTCGACGTCG
CTTGGTTGGT ACGTGGATCT GCCCGCCGGT GAACGATTTG TGGGTTATCC GGAACTCGTA
TCGGGAATCT TGTTCATGCC CACCTATGCG CCGCTCGCGA TCAGCAGCGG GTGCAGTACC
GATGGTGTGA ACTGGTTGTT CGGGCTGAAT CCGAGAACGG GCGTGGGCGC CCTATCTGGT
GTGCGAATGG GCGGCATCGG AGGGTCTACG CTCGCTAACG GTTCAGCGGG CATCTCTCTC
AACACCGGTG GCAATGCTCC GGTCAAGGAC GTGGGCGTGT CGGTCGTGCC CAGGCTCGAG
CCTAAGGTCA ATCCCAAGGA TGGTTCTGCG GCGCCCACTG TTCCTCCAGG TTCGGGCTGC
TGGATGATCG TCAGCGTAGC CGGTGCCGCA CCCATGTATG TTCCTTATCC TTGCGGCCGC
CAGTCCTGGC GCCAGCTTCA GTAA
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| Protein sequence | MHLRRRRLTP SSSSEAVCMS RRILKTAIAS VVVLITMGGY FVYNLIAAQG QEKLVQAPLN
NGTPVPPAFI VVVDDSNSMT FERIFKGGDG RLQWNTSNSS FFKADGSFFN SEDNCLRDSQ
DCYVYLFPFP DYNSAFPIGV ALPPLDQFGF ARSPTYNANY FDPAIQYDPW TKADRTLWKQ
ADFTAARADS RDPAVYGDAN GQIRMSKYGT IVGLGQPREV TSDNSFRFVI GMTIPSGTRY
RTTEPSTARI CNSNGFDGVR GTGGAWSTIT SNAHVGANCS VQISYIPATF YLPVAAPAPT
GYNSNDVNRP IIANACGPGC NMRRYQILKS NYLTTTDFNN ASNNFANWFQ YHRNRILSII
GSESRTLANV DNMRVGYFTI NNRKQPTMYD IGDDTSRKTL FEQIYHLIPL GGTPNRVAIE
YLGQQFRRTD FGAPVLRACQ KNGGMLFTDG YTNPNAQASP NVPSATYGNA DSTGTVNFPA
LPFADGYSET IADIAASYYS GVNTPLVTGQ GFTGGLVPVD EKCATLDKTS ADWKRLDCQK
DLHMNFYAIT LGAQGSIYEV NQAATRDPYA NAPNWNADGD PLVNDDGRVI DELWHATINS
RGQFINAKSP NEVTAAMRRV LSAASAANSP SGTLALTGAR IGAGSLTVTP EYQISNNGTD
WSSKLKANQV SVDPDTREAR FTPLWEASAQ MPAASARNVY FNDGSNVRKF DGTSISLSGL
CGLSATLYPS QSLCSQSDLT SLGATAATAA NYLLGDRSGE VQQGGKFRDR STVLGDIVNS
TPVISAPVDD YGYRGLGGTL GTSYTDYLNS KRNKAYMVYA GANDGMLHAV DGGIDSTGAV
TGGGGRERFA YVPATSYGHM GNLLLPYQVN KSSTLPNFDH RYFVDGPIAV GDTYYNNAWQ
TTLVGTTGAG GRGVFALDVT NPASFGASSR LWEINDLSGD ATVRANIGHV LGKPVIVPVR
AANGTVSWKA IFGNGYASAS GKAVLFVVDI GTSSTPTIHM IEATEPAGTT AATKISGNNG
LGNLIVLDRI DNLTIDPTTN KPARTRDGYA DTVYAADLRG AIWKFDLTST ATSVTVPAFT
TGTYSEGGLN YRQPITGGLQ AASGENGGVL VLFGTGSFSF DKDNQASSAL QTQSLYGFTD
KVDGVISTTL TRANLTPFSV SSGTSGTTRS LQQGNAPSTS LGWYVDLPAG ERFVGYPELV
SGILFMPTYA PLAISSGCST DGVNWLFGLN PRTGVGALSG VRMGGIGGST LANGSAGISL
NTGGNAPVKD VGVSVVPRLE PKVNPKDGSA APTVPPGSGC WMIVSVAGAA PMYVPYPCGR
QSWRQLQ
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