| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_01318 |
|---|
| Symbol | |
|---|
| ID | 6306997 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | - |
|---|
| Start bp | 3580660 |
|---|
| End bp | 3583830 |
|---|
| Gene Length | 3171 bp |
|---|
| Protein Length | 1056 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 642640744 |
|---|
| Product | TonB-dependent outer membrane Receptor/Oar-like protein |
|---|
| Protein accession | YP_001914595 |
|---|
| Protein GI | 188577666 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
|---|
| TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.529934 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAAGC TGACGCTTGG CCTTGTCGCC GCGCTCGCCG CCGCTCCCGT GTTTGCGCAA
AGTACCTCGG CTGGCGTTGC CGGCTTGGTG ACCAGTAGTG GCGGCCAGCC CGTCCCGAAT
GCCGAAGTCA CCATCACGCA CGTGGAGTCC GGAACGGTCA GCCGCGCCAC CACTGATGCC
AGTGGACGCT ATAACGCGCG CGGCTTGCGT GTGGGCGGCC CTTACACCAT CACCATCACC
GCCTCCGGTG CTGGCAACAC CACCCGCGAA GGCGTGTATT TGAACCTGGA CAAGGTCAAT
CAGGTCGATG CCGCCCTGGG TAGCGATCTG GCCACGCTGG GCACCGTGCA GGCGATCGCC
GGCAACTACG GCTCGGACAT TTTCAGCGCC AACAAGATGG GTACCGGCAC CAACGTGACC
CGCGAAGAAA TCGAGTCGCT GCCGTCGATC AACCGTAACC TGCAGGACTA TGTGCGCCTG
GATCCGCGCG TTGCGCAAAC CGACAAGGCC CGCAACGAAA TCTCCATCGC CGGCCAAAAT
CCGCGCTACA ACGCGATCCG CGTCGACGGC ATCAGCACCA ACGACGCCTT CGGTCTGGAA
TCCAACAGCC TGCCGACACC GCGCCAGCCG TTTTCGATGG ACGTCATCGA TGAAATCTCG
GTAGACGTGG CGAACTACGA CGTCACCATT AACGGTGGCA CCGGCGGCGT GATTAATGCG
GTCACCAAGT CCGGCACCAA CGAGTTTCAC GGGTCGGTCT ATGGCACCTA TCGTGACAAC
GATTGGTCAG GCAAGAATCA GAACGGTATT CGCCCGCAGC TGTTCGACAA CGAAGCGACG
TATGGTTTGA CCCTGGGCGG CCCGATCGTC AAAGACAAAT TGTTCTTCTT CGCGAATTAC
GAGAAGTACA AGGGCAAGGG CGTGTTCAAC GGTAACAGCG GCTTTGGTCC AACTGGTTCT
GGAGCTAGCA ATACCGTGAA CATCTCGCAG GCGCAGGTTG ACGAGATCGT TGATATTTCG
CGCAATGTGT ATGGGTTCGA CCCAGGGACG CTCGCGCTTC CTGCACTGGA TTCTGACTCT
GAGGAAAAGG GCTTCAAGCT GGATTGGAAC ATCAGCGATA AGCACCGTGG CTCGTTCCGC
TATGGCAAGT CCGAGCAAAG CACTGCGAAC CTCAATGGAT TCAGCACCAG CTCGTTGGCA
TTGAATTCGT ACCACTACGT GCGCGATTTC GAATTGGAGA CCTACACCGC GCAATTGTTC
AGCGATTGGA CCGAGGACTT CTCTACTGAG GCCAAGGTGT CTTATCGCGA CTATTCGGCG
ATACGTACCG CTGCCTCGCA GCTGCCGGCC ATCAATGTCC GTGTCGGCGC TAACTCGGTC
AACCTGGGTA CCGAGGCGAA TACCCAAGCC AATGAGTTGC GTACCAAAAC TTGGAACGCC
TTCTTCGCAG GCAACCTGTT TCTCAACGAT CACACGGTGA AATTCGGGTT CGACTACGAA
GATAACGATA TTTTCAACCT GTATGGTCCG CGCGTGTTCG GCTCCTACAG CTTCGAATCG
ATCGCCGCTT ACCGCGCCAA CAGGCCTGTG TCTTACCGCT ATTCGTCCTC GAATACCAGG
AACATCGATG ACATCGCAGC GAATTGGGGC TTGCGTAATC TTGGACTGTT TGTGCAGGAC
ACTTGGGCGG TCAACAGTAA TCTGACGTTG ACCTTCGGTC TGCGTTATGA CAAACAGCTG
GTTCCGAACA GCCCGCAGTT CAATCAGACC GCATTCGACG CATTCGGCGT GCGTAATGAC
GCTACGATCG ATGGTAACGA TCTGTGGCAG CCACGCTTCG GCTTCAACTA CACATTCGAT
GCGGACCGTC CGACCCAGTT GCGTGGTGGC GTTGGTCTGT TCCAGGGTGC TGCTGCTTCT
GTGTGGTTGT CCAATCCATT CTCCAATACC GGCTTGGCTT ACACGGATTA CAATTTCCGT
AACGCATCCC AAATCACCCG TGGCAATATC CGTTTCACCC CGGATGTCAA TAATCAGCCG
ACTGGGACCG GCGGCGCGAC CCAGTCAGTC GACTTTGTCG ACAAGGATCT CGGGCAGCCA
TCGGTTTGGA AAGCCAATTT GGCGTTTGAT GCAGAGCTTC CGTGGCACGG CATCATTGGC
TCTCTGGAAG GTGTGGTTAC CAGGGTCAAC GAGGCGATCT ATTACCAGCA GCTCAATCTG
GGTGCGCCGA CTGCGGTTGG TCAGGATGGT CGCCAGATCT ACTGGAACGC AGTTGGCCGC
AACCGCGCTA ACTGGGACAA CCAGGGGCGT GTGTCCGGCA ATGCGCTGGC GCGTGCAAAT
AGCGATCAGC GCTTCAATGA CGCCATCATT GCGCGTCCGA CCAGTGAGGG TGCGACGCAA
AGCTTCACTG TTGGTTTGAA CAAGCCCTTC AATGATAGCG ACTGGTCATG GAGCTTGGCC
TACACCTACT CAAACGCGAA GGAAGTCAGC GGTCTGACTA GCTCCACGTC GGGTTCGCAG
CTGCTCAACA CCGCAGCGTT CCAGGCGAAT GAAGAAGTCA ACGCGACTTC TGCGTATGAG
ATCAAGGATA GTTTCCTCGG CACCTTGCAG TGGAAGCACA ACTTCTTTGG TGACTATGCC
ACCAAGTTAG GCCTGGTCTA TCAGGGGCGA AGCGGCCGTC CGTACAGCTA CACGTTCGAC
AACGATGCAA ATGGCGATGG TCGAGCCAAC GATCTGCTCT ACATTCCAAA GGGGCGCGGC
GATGTTCTGT TCGGAAGTGC GGCTGAAGAG AATGCATTCT GGAATTACGT GAACAACGAC
CAGTATCTCT CCACTCATCA GGGACAACTT GCCGGTCGTA ACGCGGTGCG TAATTCGTGG
GTGAATCAGT TCGACCTGCA CATCGAGCAG GAACTTCCAG GTTTTTTCGA TGGCAACAAA
GCGCAGATCT GGCTTGACGT CATGAACGTG GGCAACTTTC TCAACAAGAA CTGGGGCCGC
GTGGACGAAT ATGCTTTCCC AGGCTTCAAG CGCGTTGTTG AATACGGCGG TATTGATGCT
GCAACCGGCA AGTATGTGTA CCGTTTCAAC GAGCCGGCTC AGTCCACTGT CTACGACGAC
AAGGGCATCT CGCGCTGGGC GCTGCAGCTG GGCTTCCGCT ACCAGTTCTA A
|
|---|
| Protein sequence | MSKLTLGLVA ALAAAPVFAQ STSAGVAGLV TSSGGQPVPN AEVTITHVES GTVSRATTDA
SGRYNARGLR VGGPYTITIT ASGAGNTTRE GVYLNLDKVN QVDAALGSDL ATLGTVQAIA
GNYGSDIFSA NKMGTGTNVT REEIESLPSI NRNLQDYVRL DPRVAQTDKA RNEISIAGQN
PRYNAIRVDG ISTNDAFGLE SNSLPTPRQP FSMDVIDEIS VDVANYDVTI NGGTGGVINA
VTKSGTNEFH GSVYGTYRDN DWSGKNQNGI RPQLFDNEAT YGLTLGGPIV KDKLFFFANY
EKYKGKGVFN GNSGFGPTGS GASNTVNISQ AQVDEIVDIS RNVYGFDPGT LALPALDSDS
EEKGFKLDWN ISDKHRGSFR YGKSEQSTAN LNGFSTSSLA LNSYHYVRDF ELETYTAQLF
SDWTEDFSTE AKVSYRDYSA IRTAASQLPA INVRVGANSV NLGTEANTQA NELRTKTWNA
FFAGNLFLND HTVKFGFDYE DNDIFNLYGP RVFGSYSFES IAAYRANRPV SYRYSSSNTR
NIDDIAANWG LRNLGLFVQD TWAVNSNLTL TFGLRYDKQL VPNSPQFNQT AFDAFGVRND
ATIDGNDLWQ PRFGFNYTFD ADRPTQLRGG VGLFQGAAAS VWLSNPFSNT GLAYTDYNFR
NASQITRGNI RFTPDVNNQP TGTGGATQSV DFVDKDLGQP SVWKANLAFD AELPWHGIIG
SLEGVVTRVN EAIYYQQLNL GAPTAVGQDG RQIYWNAVGR NRANWDNQGR VSGNALARAN
SDQRFNDAII ARPTSEGATQ SFTVGLNKPF NDSDWSWSLA YTYSNAKEVS GLTSSTSGSQ
LLNTAAFQAN EEVNATSAYE IKDSFLGTLQ WKHNFFGDYA TKLGLVYQGR SGRPYSYTFD
NDANGDGRAN DLLYIPKGRG DVLFGSAAEE NAFWNYVNND QYLSTHQGQL AGRNAVRNSW
VNQFDLHIEQ ELPGFFDGNK AQIWLDVMNV GNFLNKNWGR VDEYAFPGFK RVVEYGGIDA
ATGKYVYRFN EPAQSTVYDD KGISRWALQL GFRYQF
|
|---|
| |