| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_00481 |
|---|
| Symbol | |
|---|
| ID | 6305369 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | - |
|---|
| Start bp | 1901297 |
|---|
| End bp | 1902601 |
|---|
| Gene Length | 1305 bp |
|---|
| Protein Length | 434 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 642639138 |
|---|
| Product | multidrug resistance protein |
|---|
| Protein accession | YP_001913011 |
|---|
| Protein GI | 188576082 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTGCCC TGCTCCGCTC ATTCGGCCTG GCCTGTGCCA TCACCGTGGC GCTCGCTGCC
TGCAGCAAGC CCGAACAACA GCAGGCACCG CCGCCGGAAG TGTCGGTGCT GGAAATGAAG
CCGCAGACGC TGCCGCTGGA ACGCGACCTG GTCGGCCGCC TATCGGCATA CCGCTCGGCC
GATGTGCGCG CACGCGTGGA CGGCGTGGTG CTCAAGCGCC TGTACACCGA AGGCGCCAAC
GTCAAAGAGG GCCAACCGCT GTTCCAGATC GACCCGTCGC AGCTGAAGGC CACGCTGCTG
CAGGCGCAGG GCCAGCTGGC CGCCGCCGAA GCGACCTATA CCAACGCCAA GATCGCCGCG
ACGCGTGCGC GCAGCCTGGC GCCGCAGCAG TACGTCTCGC GCGCCGACAT CGACACCGCC
GAAGCCAACG AGCGTTCGTC CGGCGCCAGC GTGCAACAGG CGCGCGGCGC GGTCGAAGCC
GCGCGCATCC ACCTCAGCTT CGCCACCGTC ACCTCGCCGA TCACCGGTCG CGCCGGTATC
CAGCGCGTCA CCGAAGGCGC CCTGGTCGGT GCCGGTGAAG CCACCCTGCT CACCACCGTC
GACCAGATCG ACCCGCTGTA CGTGAACTTC GCCATGAACA GCGAAGAACT GGCTGCCCTG
CGTCAGGCGC AGAGCAGCGG CAACGTGCAG CTCAGCGGCG ACGGCAAGTC CTCCATCAAC
GTGGAGCTGG GCAACGGCAC GCAGTACCAG CACCCCGGCA CGCTGGACGT CTCTGCGGTG
ACGGTAAACC CGAGTACCGG TGCGGTGTCG CTGCGCGCCA CCTTGCCCAA CCCCGAACAA
TCGCTGCTGC CGGGCGCGTT CGTGACGTTC AAGGCCAGCC TGGGCCAGCG CAACAATGCC
TACCTGCTGC CGCAGCAGGC GTTGCAGCGC GATGCCACCG GACCCTACGT CCTGGTGCTG
GACAAGGACG GCAAGGTGGC CCGCAAGAAC CTTACCGTCG ACGGCCAGCA GAAGGGCCAG
TGGATCGTCA CCGGCGGCAT GACCCAGGGC GACCAGGTCA TCGTCGATGG CGTGCAAAAG
GCCAAGCAAG GGCAGCCGGC CAAGGGCGTG CCGTGGGATC CGAACAAGCC GGCACAAGGC
GGCCAGCCCG GCGCACCGGG CGCGGCGCCT GCCGCGGCCC AGAGTGGCGA TGCGCAAGCC
GCACCGTCCG CCGACAAGGC CGATGCAGCG GCGCTGGCCG CTCAGCAACA GCCCAAGCAG
GATGCGGCCG CGCAACCGGC CGACTCCCAG TCCACGCAGC AGTGA
|
|---|
| Protein sequence | MIALLRSFGL ACAITVALAA CSKPEQQQAP PPEVSVLEMK PQTLPLERDL VGRLSAYRSA
DVRARVDGVV LKRLYTEGAN VKEGQPLFQI DPSQLKATLL QAQGQLAAAE ATYTNAKIAA
TRARSLAPQQ YVSRADIDTA EANERSSGAS VQQARGAVEA ARIHLSFATV TSPITGRAGI
QRVTEGALVG AGEATLLTTV DQIDPLYVNF AMNSEELAAL RQAQSSGNVQ LSGDGKSSIN
VELGNGTQYQ HPGTLDVSAV TVNPSTGAVS LRATLPNPEQ SLLPGAFVTF KASLGQRNNA
YLLPQQALQR DATGPYVLVL DKDGKVARKN LTVDGQQKGQ WIVTGGMTQG DQVIVDGVQK
AKQGQPAKGV PWDPNKPAQG GQPGAPGAAP AAAQSGDAQA APSADKADAA ALAAQQQPKQ
DAAAQPADSQ STQQ
|
|---|
| |