| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_5007 |
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| Symbol | |
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| ID | 6289892 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010683 |
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| Strand | - |
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| Start bp | 54459 |
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| End bp | 55802 |
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| Gene Length | 1344 bp |
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| Protein Length | 447 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642627401 |
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| Product | conjugation TrbI family protein |
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| Protein accession | YP_001901367 |
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| Protein GI | 187930881 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 0.14472 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.964803 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCACGC CTGACCGCAA TGCGGCCCCC ATGACCAATG AGCCTGCCCC GCGCGTTCGC
GTGCGGCGGG GGCTGGCCAA GACGATCTCC ATTTTCTTCG GTGCCACGAT TCTGTCGATC
GTGTTCGTGC GCTATTTCAC GCACCCGCGT GAAACAGCTG ACCAACGGGC ACGGCGCGAG
CAGCTCGAAC AATTGGCGAA GGAACAGCCG GCTTCGGGAG ATGCGCTTGC TCAGAAGCTG
GAGAATCAAT TCACGCGAGC CCAGACCGAG CATCCGGCAC CCGTGGCGCC GGCGGCGCCG
AAGACGCCGC CATCCGGCCC GGTGCCGAAC GGCATGGTAG GCGGCGCGTC TTCGCCGGCC
GGCCTTCCTG GGGGAGCGCC TGGTTTCCAG GAAGGGCTGA CCCCGGAGCA GCGACTGGCC
CTGCAGCGAG CCTCCCAGGA AAATGACGCG ATGGCGGTAG TGTCCTATGG CGATCGCGAG
CAAGGCGCGG CAGCCAGTGC CGGCACCAAT CCGATCTCCG ATTACATCGC GGCGCTGCAG
CGTCAACACG CCGACAAACG TACCGCGCCT GGTGAAGCTG GGACACCTGC CATTCAAGCG
CAGCTTGCCG CGCTTGCGGC GGCCAACAGC CAGAGCCAGA ACACGCCCGG TTCCGCAACG
AACGCGCGTC ACGTCGCGTG GCAAGGACAG CAGACGAACC AAGGCCAGAG TGCAACGTTG
ACCCCGCAAG CCGCCGAATC GCCATTCATG GTTATGCCGG GCACGCCCAT CCCGGTTGTG
CTCAACCAAG GCGTCAACAG CGACATGCCC GGGCAGTACA GCGCGACCGT CGACCGGGAC
ATCTACGACA GCATCAGTGG CTCATGCCGA TTGATCGCAA AAGGCACTCG GATCGTCGGG
GCGAGCAATA GCGATGTAGC GATCGGGCAG GAGCGTATGC AGATGGGCGC CGCGCTCATG
ATCTTCCGTA ACGGCGCATC GATGGTGCTC GATGGGTTGA ACGGAGCCGA TCCGAACGGT
GAAGCCGGCG TGTCGGCCGA CGTCAACAAT CACTTCTTCA AGATTTTTGG CTCCACGTTC
CTGATCGCTG GCATCGCCCA ATACATCGGC CGCAATCAAA GCCAGCCAAC CGGCACCACG
CTCAACATCA ATGGCGGCGG CGGTGCCACC GGCTTGACCT CTGCTGCCGG CCAGGCGGTC
TCGCAGACCA CGCAGACCAT CCTGCAGCGC AACTCCAACA TCCAGCCGAC ATTGCGGCTC
GATCCTGGCC AAAAGCTCGT TTTCATCACG AAAGCGCCGA TCCGAATTCC ACCTAACACC
GTTGCTGGAG AGTGCTACCA ATGA
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| Protein sequence | MATPDRNAAP MTNEPAPRVR VRRGLAKTIS IFFGATILSI VFVRYFTHPR ETADQRARRE
QLEQLAKEQP ASGDALAQKL ENQFTRAQTE HPAPVAPAAP KTPPSGPVPN GMVGGASSPA
GLPGGAPGFQ EGLTPEQRLA LQRASQENDA MAVVSYGDRE QGAAASAGTN PISDYIAALQ
RQHADKRTAP GEAGTPAIQA QLAALAAANS QSQNTPGSAT NARHVAWQGQ QTNQGQSATL
TPQAAESPFM VMPGTPIPVV LNQGVNSDMP GQYSATVDRD IYDSISGSCR LIAKGTRIVG
ASNSDVAIGQ ERMQMGAALM IFRNGASMVL DGLNGADPNG EAGVSADVNN HFFKIFGSTF
LIAGIAQYIG RNQSQPTGTT LNINGGGGAT GLTSAAGQAV SQTTQTILQR NSNIQPTLRL
DPGQKLVFIT KAPIRIPPNT VAGECYQ
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