| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_4987 |
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| Symbol | |
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| ID | 6289900 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010683 |
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| Strand | + |
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| Start bp | 38855 |
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| End bp | 40372 |
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| Gene Length | 1518 bp |
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| Protein Length | 505 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642627382 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_001901348 |
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| Protein GI | 187930862 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 52 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00867259 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCCGCCA ACACTGCCCT TGGCACGCCA TCTTCCGCCT CCGTTCTTCT ACGCCTGACT
ACCATGGCGG CGGCATGCCT GTTGACCACC GCCTGCGCGG TCGGACCGGA TTTCAAAACA
CCCGAAGCCC CCAAGGTAAG CGGCTATACG CCGCAGCCAC TGCCGCACCA GACGTCGACC
GCCGCCACGC AGGGTGGAGA GGCGCAGCGC TTCGTGTCGG GGATGCCGGT GTCCGACCAA
TGGTGGAAGA CGTTTCAGTC GGAAAAGCTG AACAAGACAA TCGCCAATGC AATTGCCGCC
AGCCCGACTC TTGCCGCCGC CCAGGCTGCC CTGCGCGTGG CGCAGCAGCA GACGCGGGCA
CAACAGGGAG CGTTCTTCCC GATGCTGCAG GGCTCTTATC AGCCCAGCCG CCAACAGAAT
GCCGTGGGCA CGATTTCGCC CACGCTCACC TCCGGTGCGC CGATCTACAC CCTGCACACC
GCGCAGCTCA CGGTGAGCTA TGCACCGGAT GTCTTCGGGC TGAATCGCCG CCAGGTGGAA
TCGCTCAAGG CAACCGAAGA TGCGCAGTAT TTCCAGATGG AGGCGGCTTA TCTCACACTG
GCGTCCAACA TCGTGGTGGC TGCCGTGCAG GAAGCCTCGC TGCGCGCACA GATCGCGGCG
CAGCAACGCA TTGTCGATAT CAATACGCAG TTGCTCGACA ACCTGCACAA GCAGTTCCAA
CTTGGCGCTG TGACGGGGCT GGATGTAGCA GCCGCCGAGA CGGCGCTGGC GCAAGCGGAG
CAGGCGCTGC CCAATCTGCA AAAGCAACTG GCGGTGCAGC GCGATCTGTT GGCCGCTCTG
GCCGGCAAAC TACCCAGCGA AGGCATCCCC GACACCTTCA CGTTTGCGGA CTTCACGCTG
CCGAAGGAGT TGCCGGTGTC GCTGCCGTCG GATCTCGTGC GACAACGCCC TGACGTGCGT
GCCGCCGAAG AACAACTGCA CGCCGCGACT GCACAGGTAG GTGTGGCCAT CGCCAATATG
CTGCCGCAGT TGACGATTAC CGGGACCAAA GGCGGCACCG CCGAAATCTT CAGCCAGATG
TTCCGTGACG GGAACGTCTT TTGGAGCCTG GTCGGCAACG TAGCACAGAC GTTCTTTGAC
GGCGGGGCGC TGCTGGCGAA AAAGCGGGCG GCGGATGCGG GCGTCGATCA AGCGGAGGCG
CAGTACCGTG GCACCGTGGT CACCGCTTTC CAGAACGTCG CCGACACCCT ACACGCGCTG
GATGCCGACG CCGACGTGCT GAAAGCCTCG CTCAAATCCG AGCAGGCCGC ACGCAAGACG
TTGAACATCA CAGACAAGCA GCGGGCAATC GGCCAAGTCA ACCTCCTCGC CGTGCTGAAC
GCCGAGCAGG CCTATCAGAC AGCAACGCAG GCCACTATCG CGGCGCGCGC AAACCGACTC
TCGGACACGG CTGCGCTATT TCAAGCGCTA GGGGGCGGGT GGTGGAACCG GGGCGGAGGT
GACATCGCAC AGCGCTGA
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| Protein sequence | MPANTALGTP SSASVLLRLT TMAAACLLTT ACAVGPDFKT PEAPKVSGYT PQPLPHQTST
AATQGGEAQR FVSGMPVSDQ WWKTFQSEKL NKTIANAIAA SPTLAAAQAA LRVAQQQTRA
QQGAFFPMLQ GSYQPSRQQN AVGTISPTLT SGAPIYTLHT AQLTVSYAPD VFGLNRRQVE
SLKATEDAQY FQMEAAYLTL ASNIVVAAVQ EASLRAQIAA QQRIVDINTQ LLDNLHKQFQ
LGAVTGLDVA AAETALAQAE QALPNLQKQL AVQRDLLAAL AGKLPSEGIP DTFTFADFTL
PKELPVSLPS DLVRQRPDVR AAEEQLHAAT AQVGVAIANM LPQLTITGTK GGTAEIFSQM
FRDGNVFWSL VGNVAQTFFD GGALLAKKRA ADAGVDQAEA QYRGTVVTAF QNVADTLHAL
DADADVLKAS LKSEQAARKT LNITDKQRAI GQVNLLAVLN AEQAYQTATQ ATIAARANRL
SDTAALFQAL GGGWWNRGGG DIAQR
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