| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_4965 |
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| Symbol | |
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| ID | 6289937 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010683 |
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| Strand | + |
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| Start bp | 12560 |
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| End bp | 14299 |
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| Gene Length | 1740 bp |
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| Protein Length | 579 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 642627360 |
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| Product | Type IV secretory pathway VirB4 protein-like protein |
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| Protein accession | YP_001901326 |
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| Protein GI | 187930840 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCGGAC ACCTTGGAAT GCACGCATGG GTCGGCAAGG CAATCATGGC CCTGCTGGCG
TGGTCGAGTC CGTGGTATTG GATCGTGCTC GCCGTGGCGT TGGCCACGGT CGGACTGCTG
CATCCCGTGC CGTGGACATT GAAGGACGAC GAGGACTCAT TCGTCGCTCA TCTTGTGTTG
TGGGTCCGCA AAGCGGCGGC ATACACCGCG CTTTGGGGCA TCTTGGCGAT ACCGTTGTTG
GTGTATTGCA CCTTCGTTCT CTCGGCTGAC ACGTCTTCTG GGCAAGCGTC CAGCGTGTTC
CTGGAGTGGG GCGCTGATCG TCTGGGCCGC TACTGGATGA TGGTCGCGGG AGCGTTCGTG
GTCGGCCTGG CGCTGCGGTT CCTGTGGGAC CGCTACGCTG TTCCAGTGCT TTCAAAGTAT
TGGCGGTCGC TTCGCATCGA GCAGGAGACG GACAAACTTG TCGATGCGCG GGAGGAAGTC
GCCACGCTCA AGGCGAAGGA TTTCAAGCCG GAGGATTACT TTGTCGACGG CAAAATCTTC
TACGGCTTGG ATGATGACGG CCAGCCGATC TACTTCGATT TGGACAGGTT CCGCACGACG
CACCACGCCA TCCTCGGCCC GACAAACTAC GGCAAGGGCA TCGTGCTGCA GAGCATCTTC
AAGCAGTGCA TTCGGTTTGG CTTCGGCATT TTTTACGTCG ATCCGAAGGG CGACAACTGG
CTGCCGTACC TGCTGCAGAA CGAAGCGAAG GCGGCCGGTC GCCGCTTCGT CTATCTCGAT
TTGAATCCGG AAGGGCGTGG TGTTTGGCAT CCGTTCCTGG GTGGCGCATT CCGCCAACGG
CGCACTCGCA TCGTGCGCGC ATTCAACCTG GAATCCTTCG GCACGGACGC CGATGTGCAC
AAGGCGAAGG AGCGCGGGCT GCTCGATGAC GCGCTCGAAG GCACCGACGG CACGATCAAG
TCGCTGTTGG AATACGTGAA AAAGAACGCC GAAACAGGGC GCGACAACCT GTCGACCTTG
CGCGATTCCT TGCGTGAATG GTCGCGTGTC GACACGTTCT CACAGTCCGT GAAGCGCAAG
GGCCATTCGA TCGAACAGTG CCTGATGAAC AACGCGATTG TGTATGTGCG TGGTGACCTA
GCCGACCCGG TGATTAAGGC CGCGACCAAG GCATACATAT CGGAACTGGT GACGGAAATT
AAGCGGCTCG ATGCGACGCG GCCGGCGCAC GTTGTGCTCG GCATTGACGA GCTGAAGTTC
CTGGCCTGCG CGGAAATCAA TGAGGCGCTG GCCACGATCC GACAGCACCA GTGCAACATG
CTGCTGGCCG CGCAGTCGAT TGCGAACCTG GAAGCACCGG ACGACAAGCG GCTCGATGGC
AAGGCGCTGG CACGGGAATT CGAGGTCAAC ACGCCGATCA AGTTCGTCTA CCGCGCCGCC
GACGAGCGCA CTGCCGAGTG GGCGGAAAAC CTGTCGGCGG GGCAATGGCT CAATGTGGTG
CAACGCGAGC AGACGAAGGC GAACAAACAC GGGGGCGAGC AGTGGGAAGC GAATCGGACG
GTTGGCAAAG AGGAGCAGCC GGTCGTTTCG CGCAATACGT TGCTGAATCT GCCTGAGCGC
ATCGCCATTG CTTACATGCC AGGCCGGATT GCTTCCAAGC TGTACACCTG CCACACGCAA
ATTGACAACA GTGTCGCATC GTGGAAAAAG CCGGAGGAAG ACACAACGAT GGCGGCATAG
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| Protein sequence | MLGHLGMHAW VGKAIMALLA WSSPWYWIVL AVALATVGLL HPVPWTLKDD EDSFVAHLVL
WVRKAAAYTA LWGILAIPLL VYCTFVLSAD TSSGQASSVF LEWGADRLGR YWMMVAGAFV
VGLALRFLWD RYAVPVLSKY WRSLRIEQET DKLVDAREEV ATLKAKDFKP EDYFVDGKIF
YGLDDDGQPI YFDLDRFRTT HHAILGPTNY GKGIVLQSIF KQCIRFGFGI FYVDPKGDNW
LPYLLQNEAK AAGRRFVYLD LNPEGRGVWH PFLGGAFRQR RTRIVRAFNL ESFGTDADVH
KAKERGLLDD ALEGTDGTIK SLLEYVKKNA ETGRDNLSTL RDSLREWSRV DTFSQSVKRK
GHSIEQCLMN NAIVYVRGDL ADPVIKAATK AYISELVTEI KRLDATRPAH VVLGIDELKF
LACAEINEAL ATIRQHQCNM LLAAQSIANL EAPDDKRLDG KALAREFEVN TPIKFVYRAA
DERTAEWAEN LSAGQWLNVV QREQTKANKH GGEQWEANRT VGKEEQPVVS RNTLLNLPER
IAIAYMPGRI ASKLYTCHTQ IDNSVASWKK PEEDTTMAA
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