9 homologs were found in PanDaTox collection
for query gene Rpic_4965 on replicon NC_010683
Organism: Ralstonia pickettii 12J



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010683  Rpic_4965  Type IV secretory pathway VirB4 protein-like protein  100 
 
 
579 aa  1194    Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012851  Rpic12D_5394  Type IV secretory pathway VirB4 protein-like protein  99.48 
 
 
579 aa  1191    Ralstonia pickettii 12D  Bacteria  normal  0.709491  n/a   
 
 
-
 
NC_012912  Dd1591_1477  type IV conjugative transfer system coupling protein TraD  24.46 
 
 
609 aa  125  2e-27  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_011092  SeSA_B0124  mobilization protein  24.55 
 
 
635 aa  112  1.0000000000000001e-23  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.795434  normal 
 
 
-
 
NC_006368  lpp1055  hypothetical protein  27.94 
 
 
659 aa  52  0.00003  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1016  hypothetical protein  27.94 
 
 
644 aa  51.6  0.00004  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_009954  Cmaq_0645  hypothetical protein  35.23 
 
 
686 aa  49.3  0.0002  Caldivirga maquilingensis IC-167  Archaea  normal  0.549524  normal 
 
 
-
 
NC_007484  Noc_0632  hypothetical protein  31.97 
 
 
708 aa  48.5  0.0003  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_0738  Type IV secretory pathway VirD4 components-like protein  24.55 
 
 
557 aa  44.7  0.005  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
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