| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_3678 |
|---|
| Symbol | |
|---|
| ID | 6287764 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 3852155 |
|---|
| End bp | 3854179 |
|---|
| Gene Length | 2025 bp |
|---|
| Protein Length | 674 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 642627262 |
|---|
| Product | putative transmembrane protein |
|---|
| Protein accession | YP_001901228 |
|---|
| Protein GI | 187930741 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1807] 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGCCG ACGCCGACGC GCGCCCTCGC TCCATCCCGC TGATGCCGAT CGCTCCCGCC
AAAGCAGGCA CCAACGTAAG CCCGCGTCGC CTGTCGGCGC TGCTGGTGAG GCGTTGGCGC
GCCGTCGTCG TGCTGATGCT GTGCGCGTAT TTTGTTGCCG GCACGTTCTG GCGCGCGCCG
TGGAAGGCCG ACGAGCCGTA TTCCTTCGGC ATCGTCATCA ACATCATCGA GCGTGGCGAC
TGGGTCATCC CCAATGTCGC CTTCGAGCCG TTCGTCGAAA AACCCCCGCT GATGTACTGG
ACGGGCGCGC TGGCCGCGCT GGCGCTGCCC GACATGCCGC CCCACGAAGC CGTGCGCGTG
GCGGTGCTGT TCTGGATGGC GCTGACGTGC TGGGCGGTCT GGCGCACGGC GCGCCTGCTG
CGCAGCGAAG CGCGCGACTG GCGCTTGCGC GTCGGTGCGG ATCTGGCGCG CGGACGTCCG
GGGCTGACGC TGTCCGCACG CCGCGAAGCC GGTCTCGACG CCGGCGGTGC TGCGCTGCGC
GACTATGCGC TGGGCGCGCT GCTTCTGTTT GCCGGCTGCA TCGGGCTGGT CGAGCACGTC
CACAAGTTCA TTGCCGATGT GCCGCAGTTG GCCGGCGCGG CGATCGCCCT GTATGGCGTC
GTGCGCTTCG TCAAAGAGAG CGAAGCCGGT GGCGCAAAGG GCGTCGATGT GCTGCGCCCA
GCGCTTTGGT TCGGCACGGG CATCGGTGTG GCCTTCCTGG GCAAGGGCGT GCTTGTGCCG
GGACTGTTCG CGATCACGCT GCTGGCGGCG ATCGCGCTGC TGCCGGATTT CCGCAACCGC
CAGGCATGGC GTTTTTATGG CCTATCGCTG CTGGTGGCGC TGCCATGGCT GGCGATCTGG
CCGGCCATCT TCTGGCACGA ATCGCCGGAC CTGTTCATCG AATGGTTCTG GGTCAACAAC
CTGGGCCGCT TCTTCGGCTT CTCACATCTG GGCGGCGAGA AAGGGTCGCT GACGACCACC
ATCCGATCGA TCTTCCTGAC CGGCACGCCC GCTGTGTGGC CGGCGGTGGC CGTGCTGGGC
GTGTCGCTGT ACAAGCTCGC GCGGCAACGC GGACGCGGCG CGCGCACGGC GTGGCTGCTG
CCATATCAGG GGCACCTTGT CGTTTCGCTG TTCGTGCTGG TGACGATTGC CGTGGTGCTG
CGCTCGGCCG TGCTGCGCGA TGTTTACTTG ATGCCGCTGC AGCCGGCGCT GGCCGTGCTG
GGCGCGCCGA TGCTGCTGCT GATTGCGCCC GCATGGCGTG CGCGTGCATG GGGCGCGGCG
GTAACGTTGT TTGGTGTGCT CGGGCTGGTG GTCTGGGCCG TGTGGGGCGC GCTCGTTACC
AGCGGCGGGC AGCTGCTGCC GGGCTGGCTG GCCAAGGTGC TGGGCCGCGT GCTGCCATTG
CCGTATGACA TGCTGGTCCA CCCGTTTGCC GTATTGGCGG CAGGGGCAAT CACGGCGCTG
TGGGCCGTCT GCGTGTGGCT GCGGCCCGCG CGCTCGGGCG TGGTCGCATG GGCGGCAGGC
CTGGGTATGG TGTGGGGCCT GCTCGGCACC CTGCTGATGC CGTGGGTGGA TGACGCCCGC
AGCTACCGAC CGCTGTTCCA GGCGATCAAG CCGGTGCTCG AATCCGCGCA GATCTGCGTG
GCCACACGCG GCATGGGCGA AAGCGAGCGC GCGCTGATGC ACTACGAAAC CGGCGTGCGC
CCCGTCAAAT GGCTGCTGGG CCACAGCGGC GCCGGCGACG ATCACCGCCC CAACCCGATC
GCGCGCACCT GCGACCTGAT ACTGGTGCTC GAAAAACGAC CGGAACACGC CCGACGCCGC
CCCCACGGAA ACAACTGGGA AATGGTGTGG CGCGGCAGCC GTCCGGGCGA CACGAACGAA
ACCTTCTCGC TGTTCCAGCG GCGCGGCAAT GGCGTGTCTG AGGCGCTGCC GTCGCCCGAG
CCCATTGTGC CGCTGACCGA CACCCCGTAT CGCGGCCGTC GTTAG
|
|---|
| Protein sequence | MPADADARPR SIPLMPIAPA KAGTNVSPRR LSALLVRRWR AVVVLMLCAY FVAGTFWRAP
WKADEPYSFG IVINIIERGD WVIPNVAFEP FVEKPPLMYW TGALAALALP DMPPHEAVRV
AVLFWMALTC WAVWRTARLL RSEARDWRLR VGADLARGRP GLTLSARREA GLDAGGAALR
DYALGALLLF AGCIGLVEHV HKFIADVPQL AGAAIALYGV VRFVKESEAG GAKGVDVLRP
ALWFGTGIGV AFLGKGVLVP GLFAITLLAA IALLPDFRNR QAWRFYGLSL LVALPWLAIW
PAIFWHESPD LFIEWFWVNN LGRFFGFSHL GGEKGSLTTT IRSIFLTGTP AVWPAVAVLG
VSLYKLARQR GRGARTAWLL PYQGHLVVSL FVLVTIAVVL RSAVLRDVYL MPLQPALAVL
GAPMLLLIAP AWRARAWGAA VTLFGVLGLV VWAVWGALVT SGGQLLPGWL AKVLGRVLPL
PYDMLVHPFA VLAAGAITAL WAVCVWLRPA RSGVVAWAAG LGMVWGLLGT LLMPWVDDAR
SYRPLFQAIK PVLESAQICV ATRGMGESER ALMHYETGVR PVKWLLGHSG AGDDHRPNPI
ARTCDLILVL EKRPEHARRR PHGNNWEMVW RGSRPGDTNE TFSLFQRRGN GVSEALPSPE
PIVPLTDTPY RGRR
|
|---|
| |