| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_2913 |
|---|
| Symbol | |
|---|
| ID | 6286987 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 3027827 |
|---|
| End bp | 3028864 |
|---|
| Gene Length | 1038 bp |
|---|
| Protein Length | 345 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642626483 |
|---|
| Product | putative type 4 fimbrial biogenesis PilW-related protein transmembrane |
|---|
| Protein accession | YP_001900468 |
|---|
| Protein GI | 187929981 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4966] Tfp pilus assembly protein PilW |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGGGCA ATCGCACGCT GCGGCGTCTG CAGCGCGGGA TGTCGCTGAT CGAATTGATG
GTCGGCATGA CGCTGGGGCT GCTGCTGCTG ACCGCGCTGG CGAGCTTGTA TGCCTCGACC
TCGCAATCGC GCGTGCAGCT GGGCAACAGC GCCACGCAGA TCGAGAATGG GCGCTATGCG
CTCGACATCA TCAGCCAGGA AGTTGGGCTC GGCGGCTTCC TCGGTGATCT GAATCTGCTG
GGAACCTCCG CCGTTGCCAC GCCCGATGTC TGCGCCGCTG CCATCAATGC GCTCGGCTTC
AGCAATAGCC CGGCAACGGT GCCCGTGGCC ATCTACGGTT ACGTGCCCGG TGCGAATGCG
GCGCCATGCT TGCCCAACCT GTCGCCCAAC TCGGAAATCC TGGTGGTGCG TCGCGTGTCG
AGCACCATTA CTTCTGCGAG CGCCGTAGCG GCAGGGCAGG CTTATCTGCA GGATTCGTTC
TGCGGCACCG ACACGGCGCC TTTTGTATTC AGCGCCACCG CAACGGACTT CACGCTCAAG
GAAAAGACCT GCAGCAAGCC CGCAGACCTT CGCCAGGTCA GTGTGCGTGC GTTCTACCTG
GCCACGTGCG ACCGCTGTGG CACGGGCGGC GACAGCATTC CCACGCTCAA GATGGTTGAG
TTTTCCAGCG GCGCAATGCA GCCCCCAAAC TCGGTCGCCC AGGGCATCGA CGACGTGCAT
TTCGCCTATG GCGTGGATAT GGACGGCAAC GGTTCGCCCG ATTGTTACGT TGCCAATCCT
GGCATCGACA ACAGCACTGC ATGCAACAAC GTGGGGGGCT ACAACTGGCT CGCGTCTGCC
GCGACCAACT GGAGCAACGT GACGGCCGTG CGCATCAACG TGCTTGCGCG CACGCTGGGC
GTGTCACCGG GCTGGACGGA TACGCGGTCC TACGATCTGG GCCGCGGTAC GCTCACCCCA
CCTTTCAAAG ATGGCTACAA ACGGCACGTC TACGCGCAAC TCGCGCGCGT CGCCAATGTG
GCCGGCCCAC GGGAGTAG
|
|---|
| Protein sequence | MMGNRTLRRL QRGMSLIELM VGMTLGLLLL TALASLYAST SQSRVQLGNS ATQIENGRYA
LDIISQEVGL GGFLGDLNLL GTSAVATPDV CAAAINALGF SNSPATVPVA IYGYVPGANA
APCLPNLSPN SEILVVRRVS STITSASAVA AGQAYLQDSF CGTDTAPFVF SATATDFTLK
EKTCSKPADL RQVSVRAFYL ATCDRCGTGG DSIPTLKMVE FSSGAMQPPN SVAQGIDDVH
FAYGVDMDGN GSPDCYVANP GIDNSTACNN VGGYNWLASA ATNWSNVTAV RINVLARTLG
VSPGWTDTRS YDLGRGTLTP PFKDGYKRHV YAQLARVANV AGPRE
|
|---|
| |