| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_2821 |
|---|
| Symbol | xerD |
|---|
| ID | 6289791 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | + |
|---|
| Start bp | 2929174 |
|---|
| End bp | 2930118 |
|---|
| Gene Length | 945 bp |
|---|
| Protein Length | 314 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642626391 |
|---|
| Product | site-specific tyrosine recombinase XerD |
|---|
| Protein accession | YP_001900376 |
|---|
| Protein GI | 187929889 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.626713 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAAGG CCGCGCGGAA AGACGCCGAA GCGCCGTCCC TGCCGCCGCA AAGCGCAGAT
GCCATCCAGC GTTTTTGCGA CGCGCTGTGG CTGGAGGATG GCCTCGCCCG CAATACGCTC
GATGCGTACC GGCGCGACCT CACGCTCTAC GCGCACTGGC TCGCCGAGCG CAACAAGTCC
ATCGCCGAAA CCGAAGACGG TGACCTGGCT GACTACTTTG CCGCACGCCA TGCCGAGAGC
CGCGCATCGT CCGCCAACCG GCGCCGCACG GTGTTCAAGC GGTTCTTTCA ATGGGCATTG
CGCGAGCACG TGGTGAACAC CGATCCGTCG CGCCTGCTGC CGACCGCCAA GCAGCCGCCG
CGCTTTCCGA AGACGCTGTC CGAAACGCAA GTCGAGGCGC TCATCAACGC GCCGGATGTC
GACACGCCGC TCGGCCTGCG CGACCGCGCG ATGATCGAGC TGATGTATGC GAGCGGGCTG
CGCGTGTCGG AAATCGTCGC GCTGAAAACG GTGGAAGTCG GCCTGAATGA AGGCGTGGTG
CGCGTGGTCG GCGGCAAGGG CGGCAAGGAC CGCCTCGTAC CGTTCGGCGC GGAAGCGGGC
GACTGGCTGC GGCGTTATCT GCAGGATCGC CAAACGGGCC GCACCGCGCT GCTCGGCGAG
CGCACGGCGG ACGCGCTGTT CGTCACCGCG CGCGGCGAGG GCATGACGCG CCAGGCGTTC
TGGTATCTCA TCAAACGCTA TGCGCTGCTC GCCGACATTC ACGCGCCGCT GTCGCCGCAC
ACGTTGCGGC ACGCATTTGC CACGCACCTG CTCAACCATG GCGCAGACTT GCGCGTCGTG
CAGATGCTGC TCGGCCACGC GGATATTTCC ACCACGCAGA TCTACACCCA CGTCGCGCGT
GAGCGGCTGC GCACACTGCA TGCCCAGCAC CATCCACGCG GATAG
|
|---|
| Protein sequence | MRKAARKDAE APSLPPQSAD AIQRFCDALW LEDGLARNTL DAYRRDLTLY AHWLAERNKS
IAETEDGDLA DYFAARHAES RASSANRRRT VFKRFFQWAL REHVVNTDPS RLLPTAKQPP
RFPKTLSETQ VEALINAPDV DTPLGLRDRA MIELMYASGL RVSEIVALKT VEVGLNEGVV
RVVGGKGGKD RLVPFGAEAG DWLRRYLQDR QTGRTALLGE RTADALFVTA RGEGMTRQAF
WYLIKRYALL ADIHAPLSPH TLRHAFATHL LNHGADLRVV QMLLGHADIS TTQIYTHVAR
ERLRTLHAQH HPRG
|
|---|
| |