| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_2624 |
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| Symbol | |
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| ID | 6289342 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | + |
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| Start bp | 2736776 |
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| End bp | 2737363 |
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| Gene Length | 588 bp |
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| Protein Length | 195 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 642626196 |
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| Product | putative conjugal transfer TRAF transmembrane protein |
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| Protein accession | YP_001900183 |
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| Protein GI | 187929696 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4959] Type IV secretory pathway, protease TraF |
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| TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0317965 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCACGA TTTCTGTTTC CACTGCTGTC ACGCATCCTC GCTCGCGCCT GCGCGCTCGC
ATCGTGCTGG CGGGCCTGTC CGTCTGCGGC CTCGCTGCGC TGGCCTGGGC GTCCTTCGTG
CATCCACTGC CGCGCCTGAC CTACAACCCG TCCGACAGCG TGGCGGTCGG TTGGTATCGC
GTCGATCCGC TCGACCATCG CACCAGCTCG CCGCCACATC CTTTGTCCGT GGGCAGCATC
GTGCTGGTGC CGCTGCCTGC CGAGGCTGCC GCGCTCGCTG CGCAGCGCGG CTACCTGCCG
ACGCGCATCC CGTTGCTCAA GCGCGTGGGC GCGGTGGCGC CGCAGGAGGT GTGTATCGCC
GACGGCAGAG TCCTTATCGA CGGCGTGCCT TCGGCCGCCG TGCTGTCTGC CGATCGCTGG
GGCCGGCCGC TGCCATCCTG GCAGCAGTGC CACCGCCTTC GGCCTGGCGA GCTGTTCCTG
CTCAGTGTCA CCAATCCGGC GTCGTTCGAC AGCCGGTATT TCGGGCCGGT CAGCGCAGCC
GCCGTGATCG GCGTTGCGCG TCCGGTCTGG TTGGAGTCGC GCCCATGA
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| Protein sequence | MTTISVSTAV THPRSRLRAR IVLAGLSVCG LAALAWASFV HPLPRLTYNP SDSVAVGWYR
VDPLDHRTSS PPHPLSVGSI VLVPLPAEAA ALAAQRGYLP TRIPLLKRVG AVAPQEVCIA
DGRVLIDGVP SAAVLSADRW GRPLPSWQQC HRLRPGELFL LSVTNPASFD SRYFGPVSAA
AVIGVARPVW LESRP
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