| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_2165 |
|---|
| Symbol | |
|---|
| ID | 6287817 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | + |
|---|
| Start bp | 2278604 |
|---|
| End bp | 2279128 |
|---|
| Gene Length | 525 bp |
|---|
| Protein Length | 174 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642625736 |
|---|
| Product | Nucleotide binding protein PINc |
|---|
| Protein accession | YP_001899731 |
|---|
| Protein GI | 187929244 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1569] Predicted nucleic acid-binding protein, contains PIN domain |
|---|
| TIGRFAM ID | [TIGR00305] probable toxin-antitoxin system toxin component, PIN family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0440807 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.167197 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGACG CTGCCGCCCT CGCCCACTCC ACCCAGGCTC CGGCCCCGCG CGTGGTGCTG
GACTCCAACA TCTGGGTCGA CATCCTGATC TTCGACGATG CGGTTGCGCG CCCGATCCGC
GCTGCGCTGG AAGCCGGCCG GCTGGACGCC ATCATCAGCC CCGCCTGTCG CGAAGAACTG
CGCCGCGTGC TCGGCTACCC GCAATTCGCC CGGTACGCCG TCGACGCGAA AGCCGCACTC
GCGTGGGTCG ATCGCGTAAC CCGATCCGTC GCCGATCCTG AAGACGCGGC CCGCGTGCAA
GGCGAAGCGT TCGTCCCGCG CTGCAAGGAT CGCGACGACC AGAAATTTCT CGCGCTCGCC
GATGCCGCCG ACGTTGCCTA TCTCGTTTCC AAGGACCGCG CCGTGCTCAA GCTCAGGCGC
CGCATGGCCA AGTATTGCGA CGTGGCGGTG TTGCCACCCA AGCAGTTCGT CGCGCTGGTC
CAGTTGGAAA ACGCGTCCCT TGCTGCAATC CCAAATCAAG CCTGA
|
|---|
| Protein sequence | MADAAALAHS TQAPAPRVVL DSNIWVDILI FDDAVARPIR AALEAGRLDA IISPACREEL
RRVLGYPQFA RYAVDAKAAL AWVDRVTRSV ADPEDAARVQ GEAFVPRCKD RDDQKFLALA
DAADVAYLVS KDRAVLKLRR RMAKYCDVAV LPPKQFVALV QLENASLAAI PNQA
|
|---|
| |