| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_2140 |
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| Symbol | |
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| ID | 6288075 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | - |
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| Start bp | 2250345 |
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| End bp | 2253251 |
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| Gene Length | 2907 bp |
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| Protein Length | 968 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642625711 |
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| Product | putative transmembrane protein |
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| Protein accession | YP_001899706 |
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| Protein GI | 187929219 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3170] Tfp pilus assembly protein FimV |
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| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.704119 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGGGTGA GCCAATACCG CCGGAGAGAA TCGTCCCATC GCAGTCCTCG CTGGTCGGCC
GTCGCGTTTG CTGCGGCGAG CCTGCTGCTG ATTCAGCCCG CTGTGCACGC GGCCGGTTTC
GGCGCGCTGC ACGTGCGTTC CAGCCTCGGC CAGCCGCTGC AGGCCGAAAT CGATCTGGCG
GGCGTGACGC CCGAAGAGGC GCAAAATCTG GTCGCCAAAT TGGCTGCGCC GGAAGCCTAT
TCGCGTGCCG GGCTGACCTA CAACCCGATC GTCTCCTCGC TGCGTGCCTC GCTTGAGCGC
CAGTCGAATG GCAACTACGT GGTGCGTCTG CGCTCGACCC AGCCCGTCGC CGAGCCGTTC
GTTGATGTTC TGGTTGACCT GAACTGGGCG AGCGGTCACG TTTCGCGTGC CTATACGTTC
CTGCTGGACC CGGTGGGCTC CAGCAATACC GCACAGAATT TCGCGCCGAC GCCGGTTGTG
CAGGCGACGA CGCCGGGCGC CGTTGAGTCG GCGCCGGTTG CTTCGGCTGC CCAACCGCAA
GCGGCTGCTC CGGCCGCTGC CGCGCCGGCA CCGTCGCGCC AGCCTCGCGC CGCTCGCCAA
ACCGCGCGTG CCCAGCAAGC TGCTCCTGCT GCCGCTGCGC CGGACGCTAC ACCCGGTGGC
TCATACACCG TGCAACGCGG CGATAGCCTG TACGACGTAG CGTCGACGGC CGCGCAAGGT
CAGGACGCCG TGTCGCTCGA CCAGATGCTG CTGGCGCTGT ATCGCAACAA TCCCAATGCT
TTCATTGGCG GCAACATCAA CCGGCTGCGT ACTGGCTCGG TGCTGAAAGT ACCGTCACAG
GTGGAGGCGC AGAAAACGCC TGCGCGCGAA GCCCGCCGCG AAGTCATCGC GCAGACGTCC
GGCTTTGCCG GCTACCGCAA CCGCCTCGCA ACGGCGGCTG AGGCCAACGC AGCGACGGAT
ACCGACTCCG CCCGCCAACA GAGCGGCAGT GTGTCGGCCC GCGTGCAAGA TCAAGCCACG
CCGGCTGCCA GCGGCCGTGA CGAACTGCGT CTCTCCAAGG CCGACCGCGC AGGCAAGGCC
GGTGCGGCCG CGGCTCGCGA TGAGGAACTC GTCGCCAAGG AGCGTGCGCT CAAGGAAATG
GAATCACGCG TTGCACAGTT GGAGAAGAAT CTCTCCGACA TGCAGCGCCT GGTTGAATTG
AAGAACGCTG AACTGGCCAA GGCAGCCAGT GGTGCCAAGC CGGCCGCTGG TGCTGCGCCG
TCGACGGCCG CGCCGGCAGT GGCCGCGGCC AATGCGCCGG CACCGGCGGC TGCGTCTGCC
CCGGCTCCTG TTGCAGCAGT TCCGGCGGAA ACGGCTGCTG CTGCCCCGGC TTCGTCGGCG
ACGGCTGCTG CGGCGGCTTC CGCACCGGAG GCCGCATCGG CGACTGTGGC TGCAGCCTCG
GCTCCGCAAG CGGCTGCCAG TGCACCGGTT GCTGCTGCGT CGGCTCCGGC TGCCGCGCCG
AAGAAGGCGC CGGTGGTTGT GGCCCCGCCT CCCCCGATTC AAGAAGAATC GTTCCTCTCG
TCGCTGCTGG GCAACCCGAT GGCCCTGGGC CTGGGCGGCT TGGTGGTCGC GCTGCTGGGT
GGTCTGGTGG TGTATCGCCG TCGCCAGCAG AAACCTGAGC AGGCACATGG CTTCCAGGAC
AGCCTGTTGT CACAGGAAAG CACTGTGATG GCGGGTGCCA ACTCTCTGTT CGGTGCGGCC
GGCGGTCAAA GCGTCGACAC CTCGCAGCAC AGCGTGTTCG GTGCGGATTT CCGCATTGGC
GGCGGCAACG AGAGCAATGA AGTCGACCCG ATCGCAGAGG CCGATGTCTA CATCGCCTAC
GGTCGCGACG TGCAAGCCGA AGAAATCCTG CGCGAGGCAC TGGAGCAACA TCCGGAGCGC
CAAGCCATTC GACTGAAGTT GATGGAAATT TACGCCAATC GTCAGGACGC CCATGGCTTC
CAGACCATTG CTGAAGAGAT GCTGGCGCAA GTTGGCGCTG CGTCGCCGGA ATGGGCAGAC
GCTGCGGCGA TGGGCCGCAA GTTCGATCCG GCCAACCCGC TGTATCTGAC GGTGCAGGGT
GATGGACACC ATCCCGGCGC CGAAGCGCAT GCTGAACCGA GCCACTCAGG TGCCGCAGTC
GCAGGTGCAG CTGCGCTGGC AGGTGTGGGT GCCGCGGTGG CCGCCGAGGC CTTCAGCCCG
ACGGTGACGG GCCAGACCAC CCGTCGTGGG GACGACTGGA CTACGCTGTC TCCGGATCTG
GACCCGTCCG CGCCGTCGAC CAAGGCACCG CAACTGGCCG ATTTCGATCT GCCGCTGGAG
TCATTCCCCG CGCCGGCGGC AGGCGAGCCG ATCACCGCGC CGGAAGAGGC ATCGGACATC
TTCAAGGTGC ATGCCGAACC TGAAGCGGAT CTGCCGCAGT TCAACGCGCA CGCTGGCGAG
GCCTATCAGC CCGTTGCCGC GCCCCCGCTG CATATGGATC TTTCGGACTT GTCGCTGGAT
CTGAACCCGA CGCCGCCTGC CGCAGAAACG GTTGCTCCTG CAGCCTCGGT TGCAGCGGAG
GAAGGCCTGC CGAGCTGGGC CCAGCCGACC GACCTGTCAC AGGCCCCGAT GCACTTCGAA
TCCGAGCCGC ATCACCCAGA GCACGCCGAG GTCGCGAACG ACGAGCCGCA ATCGGCCATC
CGCCTGGACA CTAACCTGCC GCACACGCTG TCCGGCGAGC ATGGTGCCGA CGGTGTGCGC
GATCTGCAGA TCAAGTTCGA TCTGGCCAAG GCCTATATCG AGATCGGGGA CAAGGAAGGC
GCTCGCGAAC TGCTGCAGGA AGTGCTGGAC CTGGGCGATC CGTCTTTCCA CGCCGAGGCC
CAGGCCTTGA TGCGCCAGAT CGGCTGA
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| Protein sequence | MRVSQYRRRE SSHRSPRWSA VAFAAASLLL IQPAVHAAGF GALHVRSSLG QPLQAEIDLA
GVTPEEAQNL VAKLAAPEAY SRAGLTYNPI VSSLRASLER QSNGNYVVRL RSTQPVAEPF
VDVLVDLNWA SGHVSRAYTF LLDPVGSSNT AQNFAPTPVV QATTPGAVES APVASAAQPQ
AAAPAAAAPA PSRQPRAARQ TARAQQAAPA AAAPDATPGG SYTVQRGDSL YDVASTAAQG
QDAVSLDQML LALYRNNPNA FIGGNINRLR TGSVLKVPSQ VEAQKTPARE ARREVIAQTS
GFAGYRNRLA TAAEANAATD TDSARQQSGS VSARVQDQAT PAASGRDELR LSKADRAGKA
GAAAARDEEL VAKERALKEM ESRVAQLEKN LSDMQRLVEL KNAELAKAAS GAKPAAGAAP
STAAPAVAAA NAPAPAAASA PAPVAAVPAE TAAAAPASSA TAAAAASAPE AASATVAAAS
APQAAASAPV AAASAPAAAP KKAPVVVAPP PPIQEESFLS SLLGNPMALG LGGLVVALLG
GLVVYRRRQQ KPEQAHGFQD SLLSQESTVM AGANSLFGAA GGQSVDTSQH SVFGADFRIG
GGNESNEVDP IAEADVYIAY GRDVQAEEIL REALEQHPER QAIRLKLMEI YANRQDAHGF
QTIAEEMLAQ VGAASPEWAD AAAMGRKFDP ANPLYLTVQG DGHHPGAEAH AEPSHSGAAV
AGAAALAGVG AAVAAEAFSP TVTGQTTRRG DDWTTLSPDL DPSAPSTKAP QLADFDLPLE
SFPAPAAGEP ITAPEEASDI FKVHAEPEAD LPQFNAHAGE AYQPVAAPPL HMDLSDLSLD
LNPTPPAAET VAPAASVAAE EGLPSWAQPT DLSQAPMHFE SEPHHPEHAE VANDEPQSAI
RLDTNLPHTL SGEHGADGVR DLQIKFDLAK AYIEIGDKEG ARELLQEVLD LGDPSFHAEA
QALMRQIG
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