| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1729 |
|---|
| Symbol | |
|---|
| ID | 6287256 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 1823256 |
|---|
| End bp | 1824149 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642625293 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_001899299 |
|---|
| Protein GI | 187928812 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.873688 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.924027 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACACAC TTTGGCTGAA CAATCCGGAA CGCGCTTACG CTGATTGGCA GGAGCGGGAG
GCCGAAGGCG TCGACGGCCA GCACTTCTCT GCACGCTCGC GTGCCCAGCA TCAGGCGATG
TTCGAGAAGT TCCTGCGCTA CCTTCGCGAG ACGGGCCGCG ACCTGGCCAA CTACGGAGAT
GAGCACGTAG CGGCATTTTG TGAATCGGTC GGCGCCCGAT CGGCCGCGAC AAGGATGCGG
TACCTGAAGC TCCTTGACCG CGTCGGCCGG CAACTCGTGC GCGCCGATGT ACGCGTGTCA
AATCCGGCTT CGGAGCAGTT GCGCACGGGC CATTGGCCTG ATGAGGATCA GCCCCTGTTC
CTCCCCGAAG ACAAGGACGC ACTGCTCCAG GCCTACACGC AGCCGGCGCC CGATGACGGA
TTGCGAGAAA TCCGAGGGCG TGCGGTCGTA GCGCTCTACC TGGCGACCGG CGTGACACTG
TCGGAAGGCA TTGCCACTGA GCTTGATGAC CTGCAGCTCG ATGCCACTCT GCCCTACCTG
CACATCAAAG CGAAGGCGGC GCGCGGTGCT CGAACGGTCC CCATCACACC ATTCGCAATA
CCGGCGTTGC GGACGTGGCT CACCCGACGG GCAGCAGAGG GTACCCAGGG CCGAGCCTTG
CTCACTTTGC ACACTGACGG GGCGCGGATC AATGAGGCTA GTGTCGGGCG AATCGTTAAA
GCCGCACTGA CCACGATCGA TTTCGTTGCA CCCGATATGA GCCCGCGCGT CCTGCGCAAT
ACGGTCTGCC GGCGCCTGCT CCTCGATGGC GTCGACTATG TCGAAGTGAA CCGAATCCTG
GGGCTCTCCA GCGTTCGCAC TGTCGATCGG ATTGCCGCGA CCATTGAGCG CTGA
|
|---|
| Protein sequence | MDTLWLNNPE RAYADWQERE AEGVDGQHFS ARSRAQHQAM FEKFLRYLRE TGRDLANYGD
EHVAAFCESV GARSAATRMR YLKLLDRVGR QLVRADVRVS NPASEQLRTG HWPDEDQPLF
LPEDKDALLQ AYTQPAPDDG LREIRGRAVV ALYLATGVTL SEGIATELDD LQLDATLPYL
HIKAKAARGA RTVPITPFAI PALRTWLTRR AAEGTQGRAL LTLHTDGARI NEASVGRIVK
AALTTIDFVA PDMSPRVLRN TVCRRLLLDG VDYVEVNRIL GLSSVRTVDR IAATIER
|
|---|
| |