| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1708 |
|---|
| Symbol | |
|---|
| ID | 6286516 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | + |
|---|
| Start bp | 1799499 |
|---|
| End bp | 1800863 |
|---|
| Gene Length | 1365 bp |
|---|
| Protein Length | 454 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642625272 |
|---|
| Product | beta-lactamase domain protein |
|---|
| Protein accession | YP_001899278 |
|---|
| Protein GI | 187928791 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1236] Predicted exonuclease of the beta-lactamase fold involved in RNA processing |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.354041 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCTCA GTTTTCACGG TGCGGCCGGC ACAGTGACCG GCTCAAAGTA TTTGGTGGAG
CATCAGGGGC AGCGCCTGCT GGTTGATTGC GGGTTGTTCC AGGGCTACAA GCAGTTGCGA
TTGCTGAACT GGGAGCCGTT GCCGTTCAGC GCCGCCGACA TCGATGCGGT GGTGCTGACA
CACTCCCATC TGGACCATGC CGGTGCGTTA CCGTTGCTCG TGAAACAGGG CTTCCGGGGC
CGGATTCTGG CGACGCCCTC GACAATCGAA CTATGCGGTC TGCTGTTGCC CGACAGCGGG
AGAATCCAGG AGGAGGACGC CGCCTATGCG AACCGGCATC ACACCTCCAA GCACGCCACG
GCTTTGCCGC TGTACACGGA GGACGACGCA CGTCGCGCAA TGGAACAGTT GCACCGATTG
CCTTTCGACC AGTGTGTGGA CGTCGTCCCC GACGTTACGG TGACCTTGCG CCCGGCTGGG
CATATTCTCG GCGCGGCCTC GGCCGAACTG ACAGCGGGGC AGACGACAGT GCTGTTCTCC
GGAGACGTTG GCCGCCCCGA CGACCCGGTG ATGCGTGCGC CTGCGCCGGC TCCCAAGGCA
GACTACATCG TTGTCGAATC GACTTATGGG GACCGGCTAC ACGAACCGGT ACCCAATGCG
CAGGCCGTGC TCGGTGAGGC GATTGCTCGC ACAGCACACC GTGGCGGCAT GGTCGTGATT
CCGGCGTTTG CGGTGGGGCG TGCACAGTTG CTGCTGCATT TGATCCACAA GCTGAAGCAA
CAGGGCGCGA TTCCAGACCT GCCTGTTTTT CTCGACAGCC CGATGGCAAT AGATGCAACC
GAGATCTATC ACCGCCATCA CGCCGAACAT AAGCTGTCGC TCGAAGATTG CCTCGGGATG
TACAAAGCTG CGCGCATGAT CAGGACCCCG GAGGAATCGC GGGCGCTGGC TGGGCTGGCC
CTCCCGGCTG TGATCATCTC GGCCAGCGGC ATGGCCACCG GCGGCCGCGT GCTGCACCAT
CTGAAGCATC TGGCGCCGGA CCGGCGCAAC ACCATCATCC TGGCCGGTTA TCAGGCTGGG
GGGACACGCG GCGCGCGGCT GCAGGCTGGT GAGCGAAGCC TGCGCATTCA CGGTGAGGAC
GTCGCCGTGC GTGCCGAAGT GATTTCACTG CAGGGCATGT CGGCGCATGC CGATGCAAGC
CAATTGATCG AGTGGCTGGG CAGTGCGCCA GCGGCGCCGC GCTCGGTGTT CGTCACCCAT
GGCGAGCCGG GGCCGGCTGA TGCGATGCGC CAGCGCATCG AGCGGGAACT TGGGTGGTCC
GCCAGCGTTC CGTTGTTGGG ACAGCACGTG GAGTTCGATG TATGA
|
|---|
| Protein sequence | MKLSFHGAAG TVTGSKYLVE HQGQRLLVDC GLFQGYKQLR LLNWEPLPFS AADIDAVVLT
HSHLDHAGAL PLLVKQGFRG RILATPSTIE LCGLLLPDSG RIQEEDAAYA NRHHTSKHAT
ALPLYTEDDA RRAMEQLHRL PFDQCVDVVP DVTVTLRPAG HILGAASAEL TAGQTTVLFS
GDVGRPDDPV MRAPAPAPKA DYIVVESTYG DRLHEPVPNA QAVLGEAIAR TAHRGGMVVI
PAFAVGRAQL LLHLIHKLKQ QGAIPDLPVF LDSPMAIDAT EIYHRHHAEH KLSLEDCLGM
YKAARMIRTP EESRALAGLA LPAVIISASG MATGGRVLHH LKHLAPDRRN TIILAGYQAG
GTRGARLQAG ERSLRIHGED VAVRAEVISL QGMSAHADAS QLIEWLGSAP AAPRSVFVTH
GEPGPADAMR QRIERELGWS ASVPLLGQHV EFDV
|
|---|
| |