Gene Rpic_1399 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_1399 
Symbol 
ID6286570 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp1490718 
End bp1491866 
Gene Length1149 bp 
Protein Length382 aa 
Translation table11 
GC content60% 
IMG OID642624966 
ProductZonular occludens toxin 
Protein accessionYP_001898972 
Protein GI187928485 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0437506 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.88408 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGACGC TCATCACGGG TCAACCTGGA AACGGTAAGA GCCTCTACAC GATTGCGTTT 
GTTGAGGCGA AGCGGAAGGC TGAGAGCCGT CCGGTGTTCT ACTTCGGCAT TCCCGAGCTG
TCGTTGCCTT GGACGATGCT GGACGATCCA ACGAAGTGGC ATGAGTGCCC GGAAAAATCG
ATCATCGTCA TCGACGAGGT ACAGAAGGTC ATGCCGCCGA GGCCTTCCAG CTCGAAGGCG
CCGCTGCATG TTTCAGAGCT GGAGACCCAT CGGCACAAGG GTTTCGATCT GTTCTTCATG
ACGCAGGACC CGAGCCTGGT CGATAACCAT TTGAAGAAGC TCGCCGGCGA GCACATCCAC
CTGATTCGTC AGTGGGGCCG TCAGAAGGCG GATCTGTTCA AGATGCAGAA GGTGCAGGAT
CCAACGAACG CGAACCTTAA GCGTGCGTTG CACAGCAGCT TTCCGTATCC GAAGGAGGTG
TTCGGCTGGT ACAAGTCCGC CGATGCTCAT ACGCACAAGA AGGCGATTCC GCTGAAGTAC
TACATGATGT ACGCGTTGCC GGTGGTGGCG TTGGCGGCAG CGCTGTTCGG CGGTTGGAAG
CTCTGGAAGA TCTCGCATCC TGACGTACCG CAGGTACAAG TTCCTGTTTC TGGTGCCGCA
GCTGGTCAAC TAGGTGCGCC TGGTGCAGCG GCTGCTGCAG CTCAGCGTGC GCCGATGACG
GCCAAGGAAT ACGTGGCGAG TTATGTGCCT CGTGTGCCTG GCCTGCAGTA CACCGCCCCG
GCCTATGATG AGCTCACCAA GCCTTCCCGC GTTCCCGTTC CAGCTGCGTG CGTGCAGATC
CGTGGCGGCT GTGAGTGCTG GACGCAGCAG GGCACGCGCC TGGAGACCAC GCCGCAGATC
TGTGACCAGG TGGTGAAGCG CGGCTTCTTT GAAGCGTTTG AGGCCAACGG TCAGATGGCC
AGGAGCCAGG AGCGTGTTCA GCCCGCTCCA CAGCCGGTTC CTGCCCCGCC TGCACAGGCG
CAGGAGGTGA GGGTAGTGGT AGACGCTTCC AGGCCCGCGC AAGCGGCCCA GGAGCCTCGC
AAACGCACCG TCATAGGTTC GGGCAAGGCT CGGCGCGTTG ATGAGCTCGA AGTCTTTCCT
GAGGGCTGA
 
Protein sequence
MLTLITGQPG NGKSLYTIAF VEAKRKAESR PVFYFGIPEL SLPWTMLDDP TKWHECPEKS 
IIVIDEVQKV MPPRPSSSKA PLHVSELETH RHKGFDLFFM TQDPSLVDNH LKKLAGEHIH
LIRQWGRQKA DLFKMQKVQD PTNANLKRAL HSSFPYPKEV FGWYKSADAH THKKAIPLKY
YMMYALPVVA LAAALFGGWK LWKISHPDVP QVQVPVSGAA AGQLGAPGAA AAAAQRAPMT
AKEYVASYVP RVPGLQYTAP AYDELTKPSR VPVPAACVQI RGGCECWTQQ GTRLETTPQI
CDQVVKRGFF EAFEANGQMA RSQERVQPAP QPVPAPPAQA QEVRVVVDAS RPAQAAQEPR
KRTVIGSGKA RRVDELEVFP EG