| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1272 |
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| Symbol | |
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| ID | 6286326 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | + |
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| Start bp | 1363511 |
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| End bp | 1365964 |
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| Gene Length | 2454 bp |
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| Protein Length | 817 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642624842 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_001898848 |
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| Protein GI | 187928361 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.229595 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAAGA CTGAAGAACC CGCGTCCGGA CCGCCCTCAA AAGACCGGCC CGAGGCGCGG
GCAGCCTGGC TGCGCGCCGA GCTGAACCGC TACGCCCACG AGTACTACGT GCTCGACCAG
CCCAGTGTGC CCGACGTTGA ATACGACCGG CTCTATCGCG AGCTGGAAGC GCTGGAAACC
GAACACCCCG AGCTGAAGAC ACCCGATTCG CCCACGCTGC GGGTCGGTGG CGCTGTCCTG
CCCGAATTTG CGGCGGTCAG GCATGTCATC CCGATGCTGT CGATCCGCAC CGAGACCGAC
ACCACCGCAA ACGGCGCGCG CGCGTTCGAC GCCAGCGTAA GGCGCGAGCT GGGCCTTGAT
GACACCGATC CGCCCGTGGA ATACGCCGCC GAGCTGAAGT TCGATGGCCT GGCGATCAAC
CTGCGTTACG AGCGTGGTTA TCTCGTGCAG GCGGCCACGC GCGGCGACGG CACCACCGGC
GAAGACGTCA CGCAGAACAT CCGCACGATC CGCCAGATTC CGCTGGGGCT GTCGCCAGTT
GATGGCCACG TGCCCGACGT GCTGGAAGTG CGCGGCGAGG TCTACATGCG CCGCGACGAC
TTCGAGAAGC TCAACGCCCG CCAGCGAGAG CGCGGTGACA AGACCTTCGT CAACCCGCGC
AATACCGCAG CCGGTGCCGT CCGCCAGCTC GATCCTAAGA TGGCTGCCGA GCGCCCGCTG
TCGTTCTTCG CCTATGGGCT GGGCGAAGTG GCCGGCTGGA AGGGCATGCC CGGCACGCAT
TCCAGCATGC TCGACGTGCT GCAGGCGTTC GGTTTCCCGG TCAGTAATGA ACGCGCGGCT
GTGGCGGGCG GTGAAGGCCT GGTCAGATTC CATGAGGCCA TCCGGGCCAA GCGCGACAGC
TTGCCGTTCG ACATCGACGG CGTCGTCTAC AAGGTCAACT CGCTCGCGTT GCAGCGTGAA
CTCGGCTTTC GCTCACGTGA GCCGCGCTGG GCGGTTGCGC ACAAATATCC GGCGCAGGAA
GCGCTGACCA CGGTCGAATC TATTGACGTG CAAGTCGGCC GAACGGGCGC CATCACGCCG
GTGGCGCGGC TGGTGCCGGT GTTTGTTGGC GGGGTAACGG TCACCAATGC GACGCTGCAC
AACGAAGACG AAGTGCGCCG CAAAGATGTA CGCGTGGGCG ACACCGTGAT CGTGCGGCGC
GCGGGCGACG TGATTCCCGA GGTGGTGAGT GTGGTGCTTG ATCGCCGCCC ACTGGATGAC
GTCCCGGGCA GCGACTTGTT CAATCCGCAG CAGCAGCCCA AGTACCCGCC ATTCGAACTG
CCGAAGACGT GCCCGGTTTG CGGCTCGCAC GTCGTGCGCG AAGAGGGTGA GGCGGTGGCC
CGTTGCTCCG GCGGCCTGTT CTGCTCGGCG CAGCGCAAGG AGGCGATCCG CCACTTTGCC
GGTCGCCGCA TGATGGACAT CGAAGGCCTG GGCGAGCGTT ACATCGACAA CCTGGTCGAG
TTGGACTACG TGCACGGCAT TGCCGACCTG TACAAGCTCA CGCTCGAAGA TTTTCTGGAG
ATGAAGCGCC GTGCGGACGA ACGTGATGGC GTGACGCCCG AGACGGTTTC CGCAGGCAAG
ATCGCCACCA AGTGGGCCGA GAATCTGCTG GAGGGCATCC AGGCCAGCAA GACGCCGCCG
CTGGCGCGCT TCCTGTTTGC GCTGGGCATT CGCCACGTGG GCGAGTCGAC CGCCAAGACG
CTTGCCGACT GGCTCGGCAG CCTGGCCATG ATCCGGCGTG CGCCTGCGCC GCTGCTGCTG
GCGCTGCCCG ATGTGGGTGC CACGGTGGCT GAAGCCATCG CCGATTTCTT TGCCGAGCCG
AAGAACCAGC AGGCGCTCGA TGCGCTGCTC GAAGCCGGTG TTGCACCGCA AGGCGAGCAT
GCGCCCAACG CGAAGCTGCG CGAGAAGCTG GAGCCGGCCG AACTGTACGC CACGCTGGGC
GTGCCCAAGC TGACCGCCAC GCGCGCAAAG CAATTGGCCG TGGCAGCGCC AACGCTTGCC
CAGTTGGCCA GCGTTGAGCC CGATCAGTTG GCTGGCCTGC CTGCGGATGT GACTGCATCG
CTGCTTGAAT GGCTCGCCTC GCACGACCAT CGCGCGCAAC TGGCGAAGCT CGACGCGCTG
CGCGGCGAGT TGCTCGCTGC CATGCCTGCT GAGGCCGCCG AAGAAGGCGT GCTGGACGGC
AAGACGGTCG TTTTGACCGG CACATTGCCG AACCTCACGC GTGACGAAGC CAAGGCCATG
CTGGAAGCGG CAGGCGCCAA GGTATCGGGT TCGGTGTCGA AAAAGACCGA CTACGTTGTC
GCCGGAGAAG ATGCCGGCAG CAAGCTCGCC AAAGCCGAAG AATTGAACGT GAAGGTTCTG
GACGAAGCGG GTATGCTCGC GCTGTTAAAA AAACCGGCGG GAGACCAGGC ATGA
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| Protein sequence | MSKTEEPASG PPSKDRPEAR AAWLRAELNR YAHEYYVLDQ PSVPDVEYDR LYRELEALET
EHPELKTPDS PTLRVGGAVL PEFAAVRHVI PMLSIRTETD TTANGARAFD ASVRRELGLD
DTDPPVEYAA ELKFDGLAIN LRYERGYLVQ AATRGDGTTG EDVTQNIRTI RQIPLGLSPV
DGHVPDVLEV RGEVYMRRDD FEKLNARQRE RGDKTFVNPR NTAAGAVRQL DPKMAAERPL
SFFAYGLGEV AGWKGMPGTH SSMLDVLQAF GFPVSNERAA VAGGEGLVRF HEAIRAKRDS
LPFDIDGVVY KVNSLALQRE LGFRSREPRW AVAHKYPAQE ALTTVESIDV QVGRTGAITP
VARLVPVFVG GVTVTNATLH NEDEVRRKDV RVGDTVIVRR AGDVIPEVVS VVLDRRPLDD
VPGSDLFNPQ QQPKYPPFEL PKTCPVCGSH VVREEGEAVA RCSGGLFCSA QRKEAIRHFA
GRRMMDIEGL GERYIDNLVE LDYVHGIADL YKLTLEDFLE MKRRADERDG VTPETVSAGK
IATKWAENLL EGIQASKTPP LARFLFALGI RHVGESTAKT LADWLGSLAM IRRAPAPLLL
ALPDVGATVA EAIADFFAEP KNQQALDALL EAGVAPQGEH APNAKLREKL EPAELYATLG
VPKLTATRAK QLAVAAPTLA QLASVEPDQL AGLPADVTAS LLEWLASHDH RAQLAKLDAL
RGELLAAMPA EAAEEGVLDG KTVVLTGTLP NLTRDEAKAM LEAAGAKVSG SVSKKTDYVV
AGEDAGSKLA KAEELNVKVL DEAGMLALLK KPAGDQA
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