| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_0673 |
|---|
| Symbol | |
|---|
| ID | 6287378 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | + |
|---|
| Start bp | 711560 |
|---|
| End bp | 712129 |
|---|
| Gene Length | 570 bp |
|---|
| Protein Length | 189 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 642624235 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001898256 |
|---|
| Protein GI | 187927769 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4726] Tfp pilus assembly protein PilX |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.515222 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTACTGC TGAATTTGAA TAGGCTGCGC GTTGCTCAAG GCGGTGTTGC TTTGCCTGTT
GCGTTGGTGT TTCTGGTGCT CCTGACGCTT CTAGGGTTGG CGCTCGTCAA TGGCTCGGTA
ATGCAGGAAA TGATGTTGGG CAACAGCAAA GACAGCAAGC TTGCCTTTCA GGCTGCAGAA
GCGGCCCTTC GTGATGCCGA ATTGGATGTT GCTCAAAACA TCACGACCAC AACGGCTTTT
GTGCAGGCGT GCACGAACGG GTTGTGCACG CCACCCTCGT CGTGGTCAAC GCCAAAATCG
GCGTCGGTAT CCTCTTTGAT CGATTGGACT AACGGTGCGA ATACACGCAC ATATGGCGCT
TATACGGGGG CAGTTGCATT GCCCAATGTT GCATCCCAGC CGCTATACGT CATTGAAAAA
CTCTCTGGAC TATCCGTGCC GGCCGGCGAG AGTATTGGGA TTGGTGTGAA GCCTCCAGCA
GGAGGGACGG CTTACCGGAT CACGGTCTAC TCGACCGGCG CACGCCCCGA AACCCACGTC
GTTCTAGAAT CCATTTACGT GAAGCGCTGA
|
|---|
| Protein sequence | MLLLNLNRLR VAQGGVALPV ALVFLVLLTL LGLALVNGSV MQEMMLGNSK DSKLAFQAAE
AALRDAELDV AQNITTTTAF VQACTNGLCT PPSSWSTPKS ASVSSLIDWT NGANTRTYGA
YTGAVALPNV ASQPLYVIEK LSGLSVPAGE SIGIGVKPPA GGTAYRITVY STGARPETHV
VLESIYVKR
|
|---|
| |