| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_0187 |
|---|
| Symbol | |
|---|
| ID | 6289287 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | + |
|---|
| Start bp | 205388 |
|---|
| End bp | 207406 |
|---|
| Gene Length | 2019 bp |
|---|
| Protein Length | 672 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642623758 |
|---|
| Product | integral membrane sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001897782 |
|---|
| Protein GI | 187927295 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.622547 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACCTCG TGAAGCACCT CGGCGACATG CCGACTGCGG GCACGGCGTT GGAAGGCACG
GCAACACTCT CTGCCGCCGA CCTCCAGCCG ATGTCCGATC CCGATTTCTC CTTCACCAGC
GCCTCCGGCT CGCGACGCGG CTTCTGGTGG CTGGTGGCGC TCGGGCTCGT GGTGGTGATG
GCCGTGGTGT GCGCGACCAC CTTTGTGGTG GCGTGGAACC GGGGCCTCAC GCAGGCCCAG
CAGGCCGCCG GAGGGCGGGT CGACCGCTAT GCCGCCAACC TCAAGAGCAC GCTCGATCGC
TACGAATACC TGCCGGCCCT GGTGGCGCTG CATCCGTTCA TCCACGATCT GCTCGCCAAT
CCGACACCTG CCAACGTCGA CCGCGCGAAC CGCTATCTGC GCGAAGTCAA CGATCGCGCG
CACGCCACTG CCACCTACGT GATCGCCCCC AGCGGCAAGG CGCTGGCAGC ATCCAACTAC
AACCAGCCCG ACAGCTTCGT CGGCGCCGAA TATCTGTTCC GGCCGTATTT CCAGCAGGCA
GCGGAAGGCC ACGTCGGGCG CTTCTACGGT ATTGGCATTA CGCGTGAAGA GCCCGGCTAT
TACATCTCCC AGCCGGTCAT GCAGGATGGC CGCGTGATCG GCGTGACGGT GGTCAAACTC
AACCTCGAAT GGTTCGGCCG CGCCAGCCAC GACGCGTCGG AACCGGTGAT GGTGGCGGAT
GAGAACGGTG TGATTTTCCT GTCGTCCGTG CCCGCGTGGC AGTACCGCAC GGTGGAGCCG
CTCACATCCA AGCTGCAGGC GCAGTTGGAA GCGACGCGCC AGTATTACCG CAAGCAGATC
ACGCCTCTGC CGCTGCAGCC GGAGGCGCCG GCCTTTCTGC GATTGACCGG GCGATTGCCC
GAAGGTGCAG AACTGATCCG CGTTGGCGAG CGCACGAACG CCACGCGCTA TCTGCAGGTT
TCGCGTGAAC TGGTCGAGCC GGACTGGACG CTGATGTATC TCACGCCGGT GGAGCCCGTG
ATGAGTGCTG CGCGCAGCGC CACCGTGGCG GCCGCATTTG CCTTTGCGTT CGCGTGCCTG
CTGCTCTTCT ACTGGCGTCA GCGGCGCCTG CGCATGATGG AGATGCTGCG TAGCCGCCGC
CTGCTCGAAG CCGCGTATGA CCAGCTCGAG CGCCGTGTCG AAGACCGCAC GGCCGACCTG
ATGGCCACCA ATGAACAACT GCAGCACGAG ATCGTCGACC GCACGCGTGC CGAGGCCGAA
CTGCGCGCCA CGCAGGATGA ACTCGTGCAG GCCAGCAAGC TTGCCGCGCT GGGCCAGATG
GCCGCCGGCA TCACGCACGA ACTGAACCAG CCGCTGGCTG CGCTGCGCAC GTTCTCCGAC
AACACCCGTA TCCTGCTCGA ACGCGGCCAG CACGGCGCTG CCACCGATAA CCTGCAGGCA
ATTGCCGACC TGACCGAGCG CATGGGCAAG ATCACCGCAC AGCTCAAGTT GTTTGCGGGA
CGCTCACGGC GCAAGGTGGT GGATGTGCAG GTGCGCGTGG CGCTGGATCA CACGCTCGCG
CTGCTGCGCC CTCGCCTGGG CGACGTGTTG GTCGAACTGC ACTGGCGCAT CCCCGAGACA
GAGGCCGTCG TTCGCGCAGA TGAACTGAAG CTGGAGCAAG TGCTGATCAA TCTGATTGGC
AACGCGCTCG ATGCGATCAA CGCCAATGAA CCGGTACGCG CCGGCCGCAT CGACATCACC
ATCGGCCCCA CCGAGGGAGC GCAGGCGCAA TCGAATCAAC TGACCATCGC CGTGCGCGAC
AACGGCCCTG GCATTCCGCC CGACGCCATG CCGCACCTGT TCGAGCCGTT CTTCACCACC
AAGGAGATCG GCCAGGGGCT CGGCCTTGGA CTGGCGATTT CCACCAGCAT CGCGCGCGAC
TTTGGCGGCT CGCTGTCGGC GGCCAACATG CCGGGCGGCG GGGCCCAATT TACGCTGACA
TTGGTACGCG CCGACGTCAC CTCCGCGGCA ACCACCTGA
|
|---|
| Protein sequence | MHLVKHLGDM PTAGTALEGT ATLSAADLQP MSDPDFSFTS ASGSRRGFWW LVALGLVVVM
AVVCATTFVV AWNRGLTQAQ QAAGGRVDRY AANLKSTLDR YEYLPALVAL HPFIHDLLAN
PTPANVDRAN RYLREVNDRA HATATYVIAP SGKALAASNY NQPDSFVGAE YLFRPYFQQA
AEGHVGRFYG IGITREEPGY YISQPVMQDG RVIGVTVVKL NLEWFGRASH DASEPVMVAD
ENGVIFLSSV PAWQYRTVEP LTSKLQAQLE ATRQYYRKQI TPLPLQPEAP AFLRLTGRLP
EGAELIRVGE RTNATRYLQV SRELVEPDWT LMYLTPVEPV MSAARSATVA AAFAFAFACL
LLFYWRQRRL RMMEMLRSRR LLEAAYDQLE RRVEDRTADL MATNEQLQHE IVDRTRAEAE
LRATQDELVQ ASKLAALGQM AAGITHELNQ PLAALRTFSD NTRILLERGQ HGAATDNLQA
IADLTERMGK ITAQLKLFAG RSRRKVVDVQ VRVALDHTLA LLRPRLGDVL VELHWRIPET
EAVVRADELK LEQVLINLIG NALDAINANE PVRAGRIDIT IGPTEGAQAQ SNQLTIAVRD
NGPGIPPDAM PHLFEPFFTT KEIGQGLGLG LAISTSIARD FGGSLSAANM PGGGAQFTLT
LVRADVTSAA TT
|
|---|
| |