Gene Bphyt_3718 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_3718 
Symbol 
ID6283031 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp4165997 
End bp4166596 
Gene Length600 bp 
Protein Length199 aa 
Translation table11 
GC content57% 
IMG OID642623305 
ProductLexA repressor 
Protein accessionYP_001897330 
Protein GI187925688 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG1974] SOS-response transcriptional repressors (RecA-mediated autopeptidases) 
TIGRFAM ID[TIGR00498] SOS regulatory protein LexA 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.875348 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.435562 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGTTC GATGGGTCGA GCAAATGAAC GACGAAACGC ACTTGGCCGC TCTACGTAGT 
TATTGGAAGC GACATCAGAC CTTTCCAGCG ATGTCGAAAC TCTGCGATGT CGTTGGCCTA
ACAAGCACGA GCAGCATCTT CGCCCTTATC AAAAGGCTAT CCGAGGCGGG CTTCCTCGAA
CGAGTCGAAG GTCGCATCGC GCCGACGCGC CGTTTTTTCG GTCGCCCCGT GCTCGGCGCC
GTCCGAGCCG GTCAGCCCCA GCCTGAGGGG CAGGAACCGC CGGAACTGCT GACTATCGAC
GATTACCTCG TTGATGACCC AAACAGAACA GTGCTCTGCC GGGTGCGAGG TGAGTCGATG
CGAGATGTCG GTCTTCTGGA CGGAGACTTG GTGGTCGTCG AGAAGAATCG GCCGACTCGT
CCTGGCGACA TCGTCGTTGC GGTCGTCGAT GGCGAGATGA CCGTGAAGAC TCTGCGTCTC
GACAAGAATG GTGCGTATTA TCTCGAGCCC GCTAATCAGG ACTTTCAGGT GATTCGACCG
CAGGGGTCGC TTGAGATAGT TGGTGTTGTA GTCGGCTCTG TTCGCAAGTA CGGCCGTTAA
 
Protein sequence
MNVRWVEQMN DETHLAALRS YWKRHQTFPA MSKLCDVVGL TSTSSIFALI KRLSEAGFLE 
RVEGRIAPTR RFFGRPVLGA VRAGQPQPEG QEPPELLTID DYLVDDPNRT VLCRVRGESM
RDVGLLDGDL VVVEKNRPTR PGDIVVAVVD GEMTVKTLRL DKNGAYYLEP ANQDFQVIRP
QGSLEIVGVV VGSVRKYGR