Gene Bphyt_3533 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_3533 
Symbol 
ID6282525 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp3978925 
End bp3979560 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content66% 
IMG OID642623112 
Producttranscriptional regulator, TetR family 
Protein accessionYP_001897147 
Protein GI187925505 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.1353 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.182077 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGACA GTCAAACCTC AAAGCCGGCC TCTGCGCGCC GCACGCGCAA CGCGCAGACC 
GCCGGCCCGC AGGCGCAACA GCACTTGCTG CGCGCCGCGG ACGAGCTGTT CTATCGCGAG
GGCGTGCGAG CCGTCGGCGT GGACGCGGTG GTCGAGCGCG CCGGCGTGAA CAAGATGAGT
TTGTACCGGC AGTTTTCGTC GAAAGACGAG CTTGTCATGG CTTACCTGGA GCGTAAGGAC
GAGCAGTTCT TCAGCTATGT GGAGCGCAGC TTCGCCAAAC ATCCGGGCGA GCCGGCCCGG
CAGCTTCGGC AATATTTCGA CGACCTCGCG GTGCGCGCGT CTGTCGACGA TTATCGCGGC
TGCCCTTTCG TGAATGTGTC GGTGGAGTTT CCGGAGACGG CGCATCCGGC GCGGCAGTTC
GTGTTTCGCA ACAAGGCGCG CCTGATGGCG CGGCTCACGG AACTGACCAC GGCAGCGGGC
GCCGATGATC CGGTAGCGCT CGCCAATGCG CTGGGTCTGA TGATCGAAGG CGTGTATGCG
GCCAGCCAGA CGTATGGGCC CGGATGCGGG CCCATTCTAG CCGCGCCCAA AGTCGCCGCA
CAGTTGATCG CCGCGGCGTG CGGCGCGGCA GCATAG
 
Protein sequence
MSDSQTSKPA SARRTRNAQT AGPQAQQHLL RAADELFYRE GVRAVGVDAV VERAGVNKMS 
LYRQFSSKDE LVMAYLERKD EQFFSYVERS FAKHPGEPAR QLRQYFDDLA VRASVDDYRG
CPFVNVSVEF PETAHPARQF VFRNKARLMA RLTELTTAAG ADDPVALANA LGLMIEGVYA
ASQTYGPGCG PILAAPKVAA QLIAAACGAA A