| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_2459 |
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| Symbol | |
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| ID | 6281896 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | + |
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| Start bp | 2772331 |
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| End bp | 2773083 |
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| Gene Length | 753 bp |
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| Protein Length | 250 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642622013 |
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| Product | RNA-binding S4 domain protein |
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| Protein accession | YP_001896079 |
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| Protein GI | 187924437 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0124526 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.000345164 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTGCGCC TGTCCAAGCT GATGTCCGAA CTCGGCATGT GCTCACGCCG CGAAGCCGAC
GAGTGGATCG AAAAAGGCTG GGTGATGGTG GACGGCGAGC GCATCGACAC GCTCGGCACC
AAGGTCCGTC CGGACCAGCG CATCGAAATC GACCCCGCCG CCGAGGCCGC GCAGATGAGC
CAGGTGACGG TGCTGATTCA CAAGCCGGTG GGTCTGGTCT CAGGTCAGGC AGAAGACGGT
TATCAACCGG CCATCACGCT GGTCACGCCG GAGAATCGCT GGGAAGGCGA TCACGCGGAC
ATCCGCTTTT CCGTCGCGCA TTTGCGGCAG CTTGCGCCGG CCGGCCGCCT GGACATCGAT
TCCACGGGCC TGCTGGTGCT GACGCAAGAC GGCCGGATCG CCAAGCAACT GATCGGCGGC
CATTCCGAGA TCGACAAGGA GTATCTGGTG CGCGTGGCAT TCGGCGAGCA CACCACCGAC
GTCGAAAGCC ACTTCCCGCC AGAAAGCCTC GAACTGCTAT GCCACGGCCT GTCGCTCGAC
GACGTGCCGC TGAAGCCCGC GCAAGTGAAC TGGCAGAACG GCGAGCAGTT GCGTTTCGTG
CTGCGCGAGG GCAAGAAGCG CCAGATTCGC CGCATGTGCG AGCTGGTCGG CCTCGAAGTG
ATCGGCCTGA AGCGCGTGCG CATGGGCCGA GTCATGCTGG GCGCATTGCC GCCGGGCCAA
TGGCGTTATC TGTCGCCGGA CGAGTCGTTC TGA
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| Protein sequence | MLRLSKLMSE LGMCSRREAD EWIEKGWVMV DGERIDTLGT KVRPDQRIEI DPAAEAAQMS
QVTVLIHKPV GLVSGQAEDG YQPAITLVTP ENRWEGDHAD IRFSVAHLRQ LAPAGRLDID
STGLLVLTQD GRIAKQLIGG HSEIDKEYLV RVAFGEHTTD VESHFPPESL ELLCHGLSLD
DVPLKPAQVN WQNGEQLRFV LREGKKRQIR RMCELVGLEV IGLKRVRMGR VMLGALPPGQ
WRYLSPDESF
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