Gene Bphyt_1613 details

Gene Information

• Locus tag: Bphyt_1613
• ID: 6281870
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia phytofirmans PsJN
• Kingdom: Bacteria
• Replicon accession: NC_010681
• Strand: +
• Start bp: 1814603
• End bp: 1817977
• Gene Length: 3375 bp
• Protein Length: 1124 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 642621174
• Product: exodeoxyribonuclease V, gamma subunit
• Protein accession: YP_001895247
• Protein GI: 187923605
• COG category: [L] Replication, recombination and repair
• COG ID: [COG1330] Exonuclease V gamma subunit
• TIGRFAM ID: [TIGR01450] exodeoxyribonuclease V, gamma subunit

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.913537
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 33
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCTCCAGC TCTTCTACTC GAATCGCTAC GAAACCCTTG TCGGCGCGCT GCTCGACGAC 
CTGGCGCAAG CGCCGTCCGA TCCCTGGACC GCGCAGCCCG TGATCGTCCC GAGCGCGGCG 
GTGCGGCGCC GGCTCGAACT GGATATCGCC GCGCGCCAGG GCATCTGCGC GAATGTCAAC 
TTTGGTTACC TCGCGCAATG GCTATGGGCG CAGATCGGCG GCGTGATCGA GGTGCCAAAG 
CATTCGCCGT TCGCACCGGA CCGGCTCGTG TGGCGCTGCT ACCGGCTGCT AAGCGACGCT 
GACGAGGCGC TGCCCTGGAA TGCGTCGCCG CGTTTGCGCA CGTATCTCGA TGCGGCGGAC 
GCGTCGATGC GCTACGAACT TGCGCGGCGC GTGGCCACCG TGCTCGACCA CTATCTGACC 
TATCGCCCGG AGTGGCTGTT GCAATGGCAG AAGGGCGGCT CGATCTTCGC GAGCGGCGCG 
GCTGACGACA CCGGCCCGCG CCTCGCCGGC GCGAGTGAAG CGGCGCGCGA GGATGAGCGC 
TGGCAAGCGG CGTTGTGGCG CGCGGTGCTC ACGGAACTCT CGGGCGACGC GCAAACGCCC 
GCGGCCGCCT TGCCGCCCGC TTATCGTTTT CTCGACGAAA TCGGCACGCT CGACCTCGAG 
GCGATTTCGA ATGCGCAGTG GCCCGAAGCG GTCAGCGTGT TCGCGCTGCC GACCATGCCG 
CCGTTGCATG TGGCGTTGCT GCGCGCGCTT TCGCGTTGGG TCGACGTGCG GCTGTACGTG 
ATGAATCCGT GCCGCGAGTT CTGGTTCGAC GTCGTCAGCG CGGGGCGCGT CGAAGCGCTC 
GACGCCGCCG GCCAGCTCGA CTATCAGGAA GTCGGCCATC CACTGCTCGC CGAGTGGGGC 
CGCCAGACCC AGGCGCAATT GCACATGCTG CACGAGTTGA CCGAGAGCGC TGCTTCAGGC 
GAAGTCGGAG ATTTCACGGA GAATCCGGAG CCGAGTTGGC TTGCCGCTGT GCAGAACGGC 
ATCCTCAATT TGCAGGACGA GATTGAGGCC GACGAATTGC CGATCGAGAG CGGCATCGAA 
GTTCACGTCT GCCACAGCCT GTCGCGCCAA CTCGAAGTGC TGCACGATCG TCTGCTCGGC 
TGGTTCGACG AGTTCGACGA CCTGCAGCCG TCCGACGTGC TGGTTGCCGT GTCCGACCTC 
GCGGCGGCCG GTCCCTTGAT CGACGCCGTG TTCGGCACCA CGCCGCCCGG CGACACGCGC 
CGCATTCCGT ATCGGATTAC CGGCTTGCCG CCGTCGCAGG CCAATCCGGT TGCGCGTTTG 
CTGCTCGATT GGCTGGCCTT GCCCGAGCGC AGCGTGGGTG CGCCGGATCT GATCGAATGG 
CTGCGGGTCG ATGCGATTGC CGTGCGTTAC GGCATCGACG CCAGCTCGCT CGAAGCCGCG 
CAGGAATGGC TGGCCACGGC AGGCGCGCGT CGCGGGCTCG CGCCGGTCGA GCCGGCCGGC 
GAACACGTGC CGATCGCGCG TCACACGTTC GCGGATGCGC TCACGCGTCT TTATCTCGGC 
TACGCAATGC CGGACGGCGG CGAACCGGTC GATGCGTGGT TGCCGGTCGA AGGCGCCGAC 
GGTTCGGATG CGGAACTGCT CGGCCGCCTG TCGCGTTTCG TCGACGACAT CGACAGCTTC 
GCGGCGAATT GCGCGATCGA GCGCACGCCC TCCGAATGGA CGCAACTGCT GCTCGAAACG 
CTTGCGCAGT GCTTCGACGG CGGCGTCGAG TTCGCCGATT CGCTCGCCGC CGTGCGCGAT 
GCGATCGACA AAATGGGCGA CGCGATGCAA GCCGGCGCGC AAGAAGTTGC GATGCCCGCC 
GCAGTGGTGC GCGGCGCGCT AACCGAAGCG CTTGACGACC CCGCGCGCGG CGGCGTGCCT 
TGGGGCAGCG TGACGTTTTC CTCGTTGACG AGTTTGCGCG GCTTGCCGTA TCGCGTCGTC 
TGCCTGCTCG GCATGGACGA CGGCGTGTTG CCGAGTCTCG CGCGCGCCGA CGAGTTCGAC 
CTGATGGCCG CGTTCGGCAA AGCCGGCGAC CGTCAGCGGC GCGACGACGA GCGCAATCTG 
TTCCTCGATC TTCTGCTCGC CGCGCGCGAT CGTCTCTTCA TCGCTTATAC GGGCCGCAGC 
ATTCGCGACA ACGCGCCGCT GCCGCCGGCC GCGCTGGTCG ACGAATTGCT CGACTATCTC 
GCGCAGGCGT CGGCGGGCGA GGGCGCGAGT CCGGCGGAAG TCGAGCGCGC GCGGCATGCG 
TTCATTGTCG ATCATCCATT GCAGGCGTTC GCGTCGGACT ATTTCTCGTC GCAATCTGGG 
CTGTTCAGCT ACGACGCGGA CCGCGCCGAG CTGGCCACGT TGCTGGCCTC GCCCACGCAC 
GCCGCTGCGG CGCCGTTCTT CGATCAACCG TTGCCTCCGG AGGAACCTGC GCCGATTGCC 
TTCGACGAAT TCGTGCGGTT CTGGCGTCAT CCGGCACGGG CGTTATTGCG CGACCGTCTG 
GGCATCGTGT TGTCGGACGC ACAAGGCGAA CTACTCGACA CCGAGCCGTT CGATCTGGAC 
TACGCGGGGC GGGATGCATT GGCGGACCGT CTATTGCCCG TGCTGCTCGA CGTCGATACG 
GATGACGACG TCGTGTTCGA ACGCGTGCGC CGCGTGGCGG CGGCGAGCCC GGAATTGCCG 
GGCGGCGCGA CCGGCGCGGT GTGGCGCGCG CGTGAGCTAG GCGCGTTGCG TCAGCTCGCC 
GACAGCGTGC GCCGCGAGGT GGCTTCGGGT GTCGAGCGTT TGCCGTTCGT GCTCGACATC 
GCGCCGCGCT GGCCTGAGAG CGAGGAGCTT GCCGGCGCGC TGTTCGGCCC GCATGACGCG 
CTGCTCCGGC AAGCCGCCGA AACGCCGCTG CAATTGCACG GCAGTCTGAA CCTGCTCACC 
GAAACAGGAC AAGTGATTTT CCGCTACGCC AAACCTACCG CACGCGACTA CCTGTCGGCA 
TGGCTCGCAC ATCTGGTCTA TTGCGCCGCG CGGCCGGACG GTCCACGCCG CACCGTATGG 
CATGGCAGCG GCGAGAGCTT CGAACTCGCG CCGGTCGCCG CGCCGCTCGA CGAACTGGCG 
CCGCTCGCCG CGCTGTTTAG GGCAGGGCGC ATGCTGCCGC TGCGCTTCTT TCCGAAGAGC 
GCGTGGACCA AAGTCAGCGA GAGCGATTCC GCGGCGCAGG GCGTCTGGAT CAACGACCGA 
GTGCGTGGCG AATCCGACGA CCCTGCTCTG CGCATCGCCT TGCGCGGCAC CCCGCTCACG 
ATCGACGAGC CGTTCGGCAG TCTCGCCGCG ATCGTGTTCA AGCCGCTCCT GCAACATCTG 
CGGAGCGCAT CATGA 

 

Protein sequence

MLQLFYSNRY ETLVGALLDD LAQAPSDPWT AQPVIVPSAA VRRRLELDIA ARQGICANVN 
FGYLAQWLWA QIGGVIEVPK HSPFAPDRLV WRCYRLLSDA DEALPWNASP RLRTYLDAAD 
ASMRYELARR VATVLDHYLT YRPEWLLQWQ KGGSIFASGA ADDTGPRLAG ASEAAREDER 
WQAALWRAVL TELSGDAQTP AAALPPAYRF LDEIGTLDLE AISNAQWPEA VSVFALPTMP 
PLHVALLRAL SRWVDVRLYV MNPCREFWFD VVSAGRVEAL DAAGQLDYQE VGHPLLAEWG 
RQTQAQLHML HELTESAASG EVGDFTENPE PSWLAAVQNG ILNLQDEIEA DELPIESGIE 
VHVCHSLSRQ LEVLHDRLLG WFDEFDDLQP SDVLVAVSDL AAAGPLIDAV FGTTPPGDTR 
RIPYRITGLP PSQANPVARL LLDWLALPER SVGAPDLIEW LRVDAIAVRY GIDASSLEAA 
QEWLATAGAR RGLAPVEPAG EHVPIARHTF ADALTRLYLG YAMPDGGEPV DAWLPVEGAD 
GSDAELLGRL SRFVDDIDSF AANCAIERTP SEWTQLLLET LAQCFDGGVE FADSLAAVRD 
AIDKMGDAMQ AGAQEVAMPA AVVRGALTEA LDDPARGGVP WGSVTFSSLT SLRGLPYRVV 
CLLGMDDGVL PSLARADEFD LMAAFGKAGD RQRRDDERNL FLDLLLAARD RLFIAYTGRS 
IRDNAPLPPA ALVDELLDYL AQASAGEGAS PAEVERARHA FIVDHPLQAF ASDYFSSQSG 
LFSYDADRAE LATLLASPTH AAAAPFFDQP LPPEEPAPIA FDEFVRFWRH PARALLRDRL 
GIVLSDAQGE LLDTEPFDLD YAGRDALADR LLPVLLDVDT DDDVVFERVR RVAAASPELP 
GGATGAVWRA RELGALRQLA DSVRREVASG VERLPFVLDI APRWPESEEL AGALFGPHDA 
LLRQAAETPL QLHGSLNLLT ETGQVIFRYA KPTARDYLSA WLAHLVYCAA RPDGPRRTVW 
HGSGESFELA PVAAPLDELA PLAALFRAGR MLPLRFFPKS AWTKVSESDS AAQGVWINDR 
VRGESDDPAL RIALRGTPLT IDEPFGSLAA IVFKPLLQHL RSAS