| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_1601 |
|---|
| Symbol | |
|---|
| ID | 6281764 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 1800587 |
|---|
| End bp | 1801774 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642621162 |
|---|
| Product | Rh family protein/ammonium transporter |
|---|
| Protein accession | YP_001895235 |
|---|
| Protein GI | 187923593 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0004] Ammonia permease |
|---|
| TIGRFAM ID | [TIGR00836] ammonium transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.679175 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAGTC TGAAAACCGG CACCGACACC CTCTTTCTTT TGCTAGGCGC CGCGATGGTG
CTCGCCATGC ATGCGGGATT CGCCTTTCTC GAACTCGGGA CGGTGCGCAA AAAGAATCAG
GTCAATGCGC TGGTCAAGAT TCTGGTGGAT TTCTCGGTCT CGACGATCGC GTATTTCTTT
ATCGGCTACA CCATCGCGTA CGGCGTCCAG TTCTTCGGCA GCGCCGAGTC GCTGGCAGCG
CACAACGGCT ATGCGCTGGT GCGCTTCTTC TTCCTGCTGA CGTTCGCCGC CGCGATTCCC
GCGATCGTGT CCGGCGGCAT CGCCGAACGC TCAAAGTTCA ACCCGCAACT CTTCGCGACG
TTCGTGCTGG TCGGCTTCAT CTATCCGTTC TTTGAAGGGA TTGCGTGGAG CAACCGGTTC
GGCATTCAGG ACGGGCTCGC CCACGTGTTC GGCGTGCCGT TCCACGACTT CGCCGGCTCG
GTCGTCGTGC ATGCTTTCGG CGGCTGGGTC GCGTTGCCGG CCGTGCTGCT GCTGGGCGCC
CGTCACGGCC GCTATCACCG CGACGGCGGT ATCGCCGCGC ATCCGCCCTC GAATATTCCG
TTCCTCGCGC TCGGCGCCTG GGTGCTGGCG GTCGGCTGGT TCGGCTTTAA CGTGATGAGC
GCACAGACCA TCGACAAGAT CAGCGGCCTC GTCGCCGTCA ATTCGCTGAT GGCGATGGTC
GGCGGCACGT TGACCGCGTG GCTCGCGGGC CGCAACGACC CCGGCTTCAC GTACAACGGG
CCGCTGGCCG GACTGGTGGC GGTCTGCGCG GGCTCCGACG TGATGCATCC GCTCGGCGCG
CTGGTAACGG GCGGCATCGC CGGGGTGCTG TTCGTTTATA TGTTCACCTG CGTGCAGAAC
CGCTGGCGAA TCGACGATGT GCTGGGCGTG TGGCCGCTGC ACGGTTTGTG CGGCGCGTGG
GGCGGCATCG CGGCAGGCAT CTTCGGCTTG CGCGCGCTCG GCGGTCTGGG CGGCGTGTCG
TTCGGTGCGC AACTGGTGGG CACGCTGGGC GGAATCGCGG TGGCGACGCT CGGCGGCACG
CTCGTGTACG GCGCGATCCG GCTGACGGTG GGCCTGAGGC TCGATCAGGA AGACGAGTAC
AACGGCGCCG ATCTGTCGAT CCATAAGATT TCGGCGACCT CGGAGTAA
|
|---|
| Protein sequence | MESLKTGTDT LFLLLGAAMV LAMHAGFAFL ELGTVRKKNQ VNALVKILVD FSVSTIAYFF
IGYTIAYGVQ FFGSAESLAA HNGYALVRFF FLLTFAAAIP AIVSGGIAER SKFNPQLFAT
FVLVGFIYPF FEGIAWSNRF GIQDGLAHVF GVPFHDFAGS VVVHAFGGWV ALPAVLLLGA
RHGRYHRDGG IAAHPPSNIP FLALGAWVLA VGWFGFNVMS AQTIDKISGL VAVNSLMAMV
GGTLTAWLAG RNDPGFTYNG PLAGLVAVCA GSDVMHPLGA LVTGGIAGVL FVYMFTCVQN
RWRIDDVLGV WPLHGLCGAW GGIAAGIFGL RALGGLGGVS FGAQLVGTLG GIAVATLGGT
LVYGAIRLTV GLRLDQEDEY NGADLSIHKI SATSE
|
|---|
| |