| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_0615 |
|---|
| Symbol | |
|---|
| ID | 6281729 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | + |
|---|
| Start bp | 668604 |
|---|
| End bp | 669767 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 642620180 |
|---|
| Product | acyl-CoA dehydrogenase domain protein |
|---|
| Protein accession | YP_001894264 |
|---|
| Protein GI | 187922622 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.210833 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.0397055 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGCAA CAGAACTCGA CACGCTGGAA AACGATCAAC TGATTCTCGA TATGCTGGAC
CGCTTTCTCG AAACCGAGGT GCGTCCCTAC GTTCACAAGT TCGATCACGA CGATATCTAC
CCGGCGGAGA TCGTCGAGAA GATGAAGGAG ATGGGGCTGT TCGGCTGCAT CATCGATCCC
GAGTATGGCG GGCTGGGTCT GTCGACGCGG ACCTACGCGC AGATCATCGC GCGTATCTCG
CGGGTGTGGA TGTCGGTGAG CGGCATCATC AACTCGCATC TGATTCTCGC AATGCTGGTG
CAACGCAACG GCACGCCCGA ACAGAAGAGT AAATATCTGC CGAAGTTCGC CACCGGCGAA
TGGCGCGGCG GCATCGGCCT CACCGAGCCG GATTGCGGCA CCGATCTGCA GGCGATCCGC
ACGACGGCCA AACGTGTCGG CGACGAATAC ATCGTAAACG GCAACAAGAC GTGGATCACC
AACAGCAAGC ACGGCAACAC GCTGGCGCTG CTGGTGAAGA CGGATACGAC GGCGCAGCCG
CGTCATCTTG GGATGAGTTT GTTGCTGGTG CAGAAAGGGC CCGGCTTCGA GGTCAGCCGG
CAACTCGAAA AGCTCGGCTA TAAAGGCATC GATACGTGCG AGTTGTCGTT CCACGATTAT
CACGTGTCCA CCGATGCCTT GATTGGCGGC GTGGAAGGAA GGGGCCTGCA ACAGATACTC
GGCGGCCTCG AACTCGGCCG TATCAATGTC GCGGCGCGCG GCGTCGGTGT CGCGCAAGCC
GCGCTCGATG AATCGGTGAG CTATTCGCAG CAGCGCAAAA CCTTCGGCAA GCCGATCTGC
GAACACCAGG CAATTCAGTT GAAGCTCGGC GAAATGGCGA CGCGTGTCGA AGCAGGACGT
CTGCTCGTGG ACGCCGCCGC GAAGAAGTAC GACCGCGGCG AGCGCTGCGA CATGGAAGCG
GGCATGGCGA AATACTTCGC CACCGAGGCC GCGCTGGAAA ACAGCGTCGA GGCCATGCGC
ATTCACGGCG CGTATGGTTA TTCGAAGGAG TACAACGTCG AGCGCCTGTA TCGCGACGCG
CCGCTTCTTA CGATCGGTGA AGGCACCAAC GAGATGCAAC GCATCATCAT CGCCAAGCAG
TTGATCGAAC GGAGCCCGAT ATGA
|
|---|
| Protein sequence | MTATELDTLE NDQLILDMLD RFLETEVRPY VHKFDHDDIY PAEIVEKMKE MGLFGCIIDP
EYGGLGLSTR TYAQIIARIS RVWMSVSGII NSHLILAMLV QRNGTPEQKS KYLPKFATGE
WRGGIGLTEP DCGTDLQAIR TTAKRVGDEY IVNGNKTWIT NSKHGNTLAL LVKTDTTAQP
RHLGMSLLLV QKGPGFEVSR QLEKLGYKGI DTCELSFHDY HVSTDALIGG VEGRGLQQIL
GGLELGRINV AARGVGVAQA ALDESVSYSQ QRKTFGKPIC EHQAIQLKLG EMATRVEAGR
LLVDAAAKKY DRGERCDMEA GMAKYFATEA ALENSVEAMR IHGAYGYSKE YNVERLYRDA
PLLTIGEGTN EMQRIIIAKQ LIERSPI
|
|---|
| |