| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_0389 |
|---|
| Symbol | |
|---|
| ID | 6282114 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | + |
|---|
| Start bp | 423297 |
|---|
| End bp | 424589 |
|---|
| Gene Length | 1293 bp |
|---|
| Protein Length | 430 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642619952 |
|---|
| Product | General substrate transporter |
|---|
| Protein accession | YP_001894038 |
|---|
| Protein GI | 187922396 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACCAG CGTCAAGGAG CCTTCATACG CGAGCCGTCG TCGCGGCTGT GATCGGCAAT
GCACTCGAGT GGTACGACTT CACCGTGTTT GGTTTTCTGA CGGTGGTGAT CGCCCAGTTG
TTCTTCCCGG CCGGCAACGA CTATTCGTCG TTGCTCCTCG CCACCGCGAC CTTCGGCGTC
GCATTCGTCA TGCGGCCGAT CGGCGGCATC GTACTCGGAC TCTACGCGGA TCGCGCGGGA
CGCAAAGCGG CGTTGTCGCT CGTCATCGCG CTGATGACGC TCGGCATTCT GTTGCTGGCG
ATCGCACCGC CGTATTCCGC CATCGGCATC GGCGCGCCAT TGATGATCGT AGTCGGACGC
TCGCTGCAAG GCTTTTCCGC CGGCGGGGAG TTCGGCAGTT CGACGGCGTT GTTGATTGAA
GCAGCGCCGT TTTCGAAACG CGGCTTCTAC GGCAGTTGGC AGATGGCAAG CCAGGCGGCG
GCGCTGCTGC TTGGCGCACT GGTGGGCGCC GCGATCACGC GCGGACTGTC GCCCGAGGCG
TTGAAATCGT GGGGCTGGCG CGTGCCGTTC ATTCTGGGTT TGATCATCGG GCCGATCGGC
TTTTACATCC GCTTGCATCT CGCGGATTCG GAAGCGTTTC TGCTCGCGCA AAAAACCGCG
CGGCGCGCGA CGCTCGGCGA AGTGTTCAGA ACTCACGCCC GCGACGTGCT CTGCGGACTC
GGCTCGGTGA TCGCACTCAC GGTGACGATT TACGTGCTGA TCAGCTATCT GCCGACCTTC
GCGGTCAATC AACTCAAGTT GCCCTACGCG CAATCCTTTT ACGCGGTGAT CGTCGGCAAT
CTGCTGTTGA CGGTGCTGTC GCCAGTGGCC GGCGCATGGT CGGACCGGAT CGGGCGCAAG
GGGCTGTCGC TGTGGTCGCT GCTGATTACG CTCGTGATCA TCTATCCGCT GTTCGCGTGG
CTCGCGGCGG AGCCGAGCGT GTCGAAACTG ATTCTCGTGC AGGCGCTGCT GTCGATTACG
CTGTCCGGCT ATTACGGACC GTTCGGCGCG CTGATCGCGG AACTGTTTCC GGCAAACGTG
CGTTCGACCG GTTTATCGCT CGCCTACAAC ATTGCGGTGA TGGTGTTCGG CGGCTTCGGG
CCGTTTGTCG TGACGTGGCT GATCAACATC ACCGGCTCGC CGCTCGCACC GACTTACTAC
GTGATGGGCG GACTCGCGCT GTCGATCGTC GCGGTGGCAT GCATTCCGGG GCAGCGTCAC
GCGGATCTCG ACGCGCATCG CAAACCGGCC TGA
|
|---|
| Protein sequence | MTPASRSLHT RAVVAAVIGN ALEWYDFTVF GFLTVVIAQL FFPAGNDYSS LLLATATFGV
AFVMRPIGGI VLGLYADRAG RKAALSLVIA LMTLGILLLA IAPPYSAIGI GAPLMIVVGR
SLQGFSAGGE FGSSTALLIE AAPFSKRGFY GSWQMASQAA ALLLGALVGA AITRGLSPEA
LKSWGWRVPF ILGLIIGPIG FYIRLHLADS EAFLLAQKTA RRATLGEVFR THARDVLCGL
GSVIALTVTI YVLISYLPTF AVNQLKLPYA QSFYAVIVGN LLLTVLSPVA GAWSDRIGRK
GLSLWSLLIT LVIIYPLFAW LAAEPSVSKL ILVQALLSIT LSGYYGPFGA LIAELFPANV
RSTGLSLAYN IAVMVFGGFG PFVVTWLINI TGSPLAPTYY VMGGLALSIV AVACIPGQRH
ADLDAHRKPA
|
|---|
| |