| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_0339 |
|---|
| Symbol | |
|---|
| ID | 6282578 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 366358 |
|---|
| End bp | 367995 |
|---|
| Gene Length | 1638 bp |
|---|
| Protein Length | 545 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642619902 |
|---|
| Product | Tetratricopeptide TPR_2 repeat protein |
|---|
| Protein accession | YP_001893988 |
|---|
| Protein GI | 187922346 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTACCGA CTTCCCACAG CGAGGCCGAC GCCTCTTCAG CTTTCCTGAC TGTTCTGCGA
CAAGCCGTCG CAGCCAGGCA AACCGGTACG GCGCAAGCCG ACGCCGACTG TCTCGACGCT
GCGGCGCGAA TTCGTCCACT CGACCACGCA TCGCTCGATT CGCTCGTGGC CAAGCTGCTC
GAAGAACACC GTTCCGGCGA CGCAATCGAA CTCGCCGCCA TTATTGCCCA ACTCGATCCG
CGCAACGCTC TTGCGCACTT TCGCCTCGGC TACTCGTTGC AGATGGCGAA GCGGCATGCC
GAAGCCATCG CACCTTATCG CCAGGCACTC GCCATCGAAC CGCGTTTGCC GCGCCTGCGC
AACAATCTCG CCGCCGCGTT GACGTTCACC GGCGGCGACC TGAACGAACG GATCGCGCTG
CTGGAAAATG CCGTCCGCGA TGACCCCGAT GAAGGCGACG GCTGGACCAA TCTCACGCAC
GCTTACCGTA CGAAAATGGA TCTGCCGCGC GCGCTCGAAG CCGGCGCAAA GGCAATGCAA
TGCGCGCCGC ATAGCCCGCT CGCGCACAAC AACTATGCGC TGACGCTGCG AGAGGCGCAA
CGCTGGGACG ACGCGATGCA AGCTGCCCAA ACCGCTTGCG CGCTGGCCCC CAACGACGCC
TCCATGCGCT CTAATCTCTC CATGCTGCAA CTCGTGCGTG CCGATTACGA GCACGGCTGG
GCATCGCATG AAGCGCGCTG GGACGGCTCT GCCGAATTGG GCGGCAACCG TCCGATGATG
CCGGCGCCGC TTTGGCGTGG CGAACCGCTC GCCCGGAAGA CATTGCTCGT GTGGGGCGAG
CAAGGCATGG GCGACCTGTT GCAGTTCTGC CGCTACATTC CGATGCTGGC CGAGCGCGTG
CATCGCGAAG GCGGCCGTCT CATCTGGAAT TCGTTCCCGC AGATGGGCGC ACTCCTTAAG
CGCAGCCTCG GCGGTCATGC GGACGAGTTT TCAGCCGGTG GCGGCGTCGA AACGCTGCCG
TCGTTCGATT ACGAGATTCC GTTGCTGAGC CTGCCGCTGA TTTTCGACAC GCACGAGGCG
ACGATTCCGG CGGCGCCCTA TTTGCGGGCG GACCCGGCGG GGACCAAATC GTGGCAAGAG
CGGCTGGCAG GGGAATCGCG GCTCAAGGTC GGGCTAACGT GGACCGGCAG CCACGGTCAT
CAACGCAATC CGTTCCGGCG CGTCGGCTGG GAGCGCTATG CGGCTCACTT CGGCGGCATG
CGGGACGTGG CGTTCTATTC ACTGCAGCCG GGCGCCGGCG CGGACGTGAC GGCGGCACGC
GCGGCCGGCT TGCCGATGAC CGACCACACC GCCAAATTCG CGACCTTCGA CGATACGGCC
GCGTTTGTCG GCGCGCTCGA TCTCGTCATT ACGGTTTGCA CCTCGGCGGC GCATCTGAGC
GGCGCAATCG GCCAGCGCAC CTGGGTGCTG CTCGACGTCA ACCCGCATTG GGTCTGGTTG
CTCGACCGTC ACGACAGCCC GTGGTATCCA AGCGCCACGC TTTACCGGCA GCCACAATTC
GGTGAGTGGG AGCCGGCGCT GGAAGCCGTC GCGCGTGACC TGAGCGCGCT TGCGGCGCAG
CACTGCCGGA CGGCGTAA
|
|---|
| Protein sequence | MLPTSHSEAD ASSAFLTVLR QAVAARQTGT AQADADCLDA AARIRPLDHA SLDSLVAKLL
EEHRSGDAIE LAAIIAQLDP RNALAHFRLG YSLQMAKRHA EAIAPYRQAL AIEPRLPRLR
NNLAAALTFT GGDLNERIAL LENAVRDDPD EGDGWTNLTH AYRTKMDLPR ALEAGAKAMQ
CAPHSPLAHN NYALTLREAQ RWDDAMQAAQ TACALAPNDA SMRSNLSMLQ LVRADYEHGW
ASHEARWDGS AELGGNRPMM PAPLWRGEPL ARKTLLVWGE QGMGDLLQFC RYIPMLAERV
HREGGRLIWN SFPQMGALLK RSLGGHADEF SAGGGVETLP SFDYEIPLLS LPLIFDTHEA
TIPAAPYLRA DPAGTKSWQE RLAGESRLKV GLTWTGSHGH QRNPFRRVGW ERYAAHFGGM
RDVAFYSLQP GAGADVTAAR AAGLPMTDHT AKFATFDDTA AFVGALDLVI TVCTSAAHLS
GAIGQRTWVL LDVNPHWVWL LDRHDSPWYP SATLYRQPQF GEWEPALEAV ARDLSALAAQ
HCRTA
|
|---|
| |