| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_4878 |
|---|
| Symbol | |
|---|
| ID | 6285739 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010678 |
|---|
| Strand | + |
|---|
| Start bp | 1225653 |
|---|
| End bp | 1228628 |
|---|
| Gene Length | 2976 bp |
|---|
| Protein Length | 991 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 642619354 |
|---|
| Product | response regulator receiver protein |
|---|
| Protein accession | YP_001893389 |
|---|
| Protein GI | 187927044 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG5265] ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.360645 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.0233171 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCAAGAC CGTCTGGAGA CCCACGCCTG GTGACGAGTG CATCTCCCCC TCCTCCTTCC
ACGCAGGACG CCAGCCTGCA ACAACGGATG TTGATAGCGC TGTGGCGCGC CATCTGGCGC
TACCGCAAGC GCGTGATGGC CGCCGTGGCG CTGCTGGTGC TGGCCAAGCT ATGCGCGGTG
GGTGTGCCCA TCGTGCTCAA GTGGATCGTC GACGGTTTCG GCGAGGCCGC ACGGGCGCGC
GTGTTTCCGG CCTTCCTGCT GCTGGCCTAT GCCGTGCTGC GCTTTGGCGG CACGCTGTTC
GGCGAACTGC GCGACATGGT GTTTTCGCGC GTGTCGCAGC CGACGGTGGC CGCCTTCATG
GCGCAGGCCT TCGAGCACCT GCATCAGCTC GGCCCGCGCT TTCATGCGAG CCGCCAGACC
GGCGGACTGA TCCGCGATGT GGAGCGCGGC ACCACCGGCA TCGAATTCCT GCTCGGCGTG
GCGCTGTTCA CCATCCTGCC GACGATGGTG GAAATCGGTT CGGTGCTCGT CATCATGATG
AGCCGCTACA GCGGCTGGTA TCTCGTCACC ATCGGGCTGA CGTTCGGGGC CTACTGCACG
GCCACCGTGC TGCTGACTCG CCGCCGCGTG CGGCTGCAGC GCCAGATGAA CGAGTTCGAC
TCGATGGCCG GCAGCCGGCT GCTGGACAGC ATGCTCAACC ACGAGGCCGT GAAGGTCTAC
ACCGCCGAGC GCTTCGAGGC GCGCCGCTAC CGCGACATCC TGCGTCAACG CATTGAAACC
GCTGTGGCCA ACCAGCGGGC ACTGTCGCTG CTGCACGTAT CGCAAAGCGG CGTGATTGCG
GGCGGGGTGG CCACGGTCAT GCTGCTGGCA GGACAGGACG TCTCACGCGG CGTGCTGTCG
GTGGGCGACC TCGTGCTGAT CAATGCGTAC ATCATCCAGG TGTGCCTGCC GCTGAATGCG
CTGGGCTTCA TGTTCCGCGA GGCAAAGGAT GCAGCGATCA ACGCCGAGCG CCTGTTCCAT
CTCCTCGAAC AGCGGCCCGA TGTAATGGAC CTGCCGAATG GCGCACCGCT GCGCGTGACG
CAGGGCGACG TGCAGTTCGA CCACGTGGCG TTCGGCTACG AGGCCGCGCG CCCGATCCTG
CACGACCTCT CGCTGCACAT TCCGGCCGGG CACACGGTGG CCGTAGTGGG CGGCAGCGGC
TCGGGCAAGT CGACCCTGGC GCGTCTGCTG CTGCGCTTCT ACGACCCGTG GGCCGGCCGT
GTGTCCATCG ACGGTCAAGA CCTGCGAGTG GTGACGCAGG ACAGCGTGCG GCGCGCCATC
GGCATCGTCC CGCAGGACAC CATCCTCTTC AACGACACCA TCGCCTACAA CATCGCCTAC
GGCCGCGAAG GCGCCACCCT GGCCGAGGTG ATGGAGGCGG CGCGGGCCGC CTACGTGCAC
GACTTCATCG CCGCCTTGCC CGAGGGCTAC CAGACCATGG TCGGCGAGCG CGGCCTGAAA
CTCTCTGGCG GTGAAAAGCA GCGCATTGCC ATCGCGCGCG CCCTGCTGAA GAACCCGTCG
ATCCTGATCT TCGACGAGGC CACCTCAGCG CTCGATACGC GGTCCGAGCG GGCCATCCAG
CGCGAGCTGG ACCGGCTGTC CGCGCACCGC ACGACGCTCG TGATCGCGCA CCGGCTTTCC
ACGGTGGTCG ACGCGCACGA GATTGTCGTG CTGGAACAGG GCCGCATCGT CGAGCGGGGG
CGCCATACCG ACCTGCTGGC CGCCGACGGC GTCTACGCGC AGTTGTGGAC GCTGCAGCGC
CAGCAGTCCG ATCTGGAGCA GGCCCAGCAC CGCCTGGCGC AACAGCCGAT CAGTCTCGTG
GCGCTGGTCG TGAGCGTGCT CGACGGGCTG CGCGAGGCCA TCGATGCACG GCGCATCACG
GTGTACTCGG TGATCCGGTC GGAAACGCCT AGCATCACCG GAGACCCCAG CCGCCTGCAG
GGCATCGTCG CCGACGTCCT GAGCCACGCG GTGCTGGCAA GTCATCCGGG CAGCCGCATC
GAGATCGTGC TCGAGCGCGT GGAAGGCATG GCGCAATTGC GCGTGACAGA CACGATCGCC
ATACCTGCCG CTGCCGATGC CGCCATTCCA CGTGCAGTGC GACCGCCGGC CGAGCCTGCC
CCGGAAGCGG TGCGCTCCGC CGTGGGGCCG GCCTCGTCAG CTTCGTCGCC CGGGCCGTTC
GACGTGCTGG ACCCGGTGGA ACCCCTGACG CCCTTGCCGC AGGGGCCGGG GCCCGGGCCG
TTCGATGCGG CCGCCGATGA GGACACCGTT TCCGCACCCG CGGCCACGCT CGACCCCCTG
TGGATACGGT CTGTGGTGGA GCAGCACGGC GGGCGCTTTG CCGTGGTGCC ACTGCCGCAC
GGAGACGGCA CCACCTATGT GATGGACTTC CCGATACGGG CCGTTGCGCC GCTGCCGTCC
GGGCCGAGCG GCGTCGAGAC CATGCCGGCA CCTCGGCAGC AGACGGCGCT GCCGCCGTCC
GATGCGCTGG CGGGCGTGCA CGTGCTCATC GTCGATGACC AGGAAGATGC GCGCGAGATG
CTGCAGTTGC TGCTGGAGGC CTACGGCGCG ACGGTCACCG CATACGCGGC CGCCAAACCT
GCGCTGGCCG CCTTGCGGGC CGCACGGGGC AACTCGTGGC CCGATGTGCT GGTCTCCGAC
ATTGCCCTGG GCGATGACGA AGACGGCTAT GCCCTGCTGC GCGCCGTGCG CTTGCTGGAG
ACCGAGCGCG ACATGCCGCT CGACGCGCGC CTGCCGGCGG TCGCGCTGTC CGGCTACGAC
AGACCGGAGG ACCGTACCCG CGCACTGCTG GCCGGCTTCC AGATGCACCT GGCCAAACCG
ACCGAGCGCG GCGAGCTGGT CACCGCCATC CTCAGCGTCA TCCGCGCGCG ACACGCCCCC
GCGCGTCCAT CGCACGCGTC CATGCCTTCC CACTAA
|
|---|
| Protein sequence | MARPSGDPRL VTSASPPPPS TQDASLQQRM LIALWRAIWR YRKRVMAAVA LLVLAKLCAV
GVPIVLKWIV DGFGEAARAR VFPAFLLLAY AVLRFGGTLF GELRDMVFSR VSQPTVAAFM
AQAFEHLHQL GPRFHASRQT GGLIRDVERG TTGIEFLLGV ALFTILPTMV EIGSVLVIMM
SRYSGWYLVT IGLTFGAYCT ATVLLTRRRV RLQRQMNEFD SMAGSRLLDS MLNHEAVKVY
TAERFEARRY RDILRQRIET AVANQRALSL LHVSQSGVIA GGVATVMLLA GQDVSRGVLS
VGDLVLINAY IIQVCLPLNA LGFMFREAKD AAINAERLFH LLEQRPDVMD LPNGAPLRVT
QGDVQFDHVA FGYEAARPIL HDLSLHIPAG HTVAVVGGSG SGKSTLARLL LRFYDPWAGR
VSIDGQDLRV VTQDSVRRAI GIVPQDTILF NDTIAYNIAY GREGATLAEV MEAARAAYVH
DFIAALPEGY QTMVGERGLK LSGGEKQRIA IARALLKNPS ILIFDEATSA LDTRSERAIQ
RELDRLSAHR TTLVIAHRLS TVVDAHEIVV LEQGRIVERG RHTDLLAADG VYAQLWTLQR
QQSDLEQAQH RLAQQPISLV ALVVSVLDGL REAIDARRIT VYSVIRSETP SITGDPSRLQ
GIVADVLSHA VLASHPGSRI EIVLERVEGM AQLRVTDTIA IPAAADAAIP RAVRPPAEPA
PEAVRSAVGP ASSASSPGPF DVLDPVEPLT PLPQGPGPGP FDAAADEDTV SAPAATLDPL
WIRSVVEQHG GRFAVVPLPH GDGTTYVMDF PIRAVAPLPS GPSGVETMPA PRQQTALPPS
DALAGVHVLI VDDQEDAREM LQLLLEAYGA TVTAYAAAKP ALAALRAARG NSWPDVLVSD
IALGDDEDGY ALLRAVRLLE TERDMPLDAR LPAVALSGYD RPEDRTRALL AGFQMHLAKP
TERGELVTAI LSVIRARHAP ARPSHASMPS H
|
|---|
| |