| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_4408 |
|---|
| Symbol | |
|---|
| ID | 6286027 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010678 |
|---|
| Strand | - |
|---|
| Start bp | 715694 |
|---|
| End bp | 716485 |
|---|
| Gene Length | 792 bp |
|---|
| Protein Length | 263 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642618888 |
|---|
| Product | polysaccharide deacetylase |
|---|
| Protein accession | YP_001892929 |
|---|
| Protein GI | 187926584 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.158219 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAACACCT GGGTCTTCTC GTTGTGCTGG GCGATTCTGG TGTTTGCGTG CCCTGGAGCC
AACGCAGACA TGCCCGCCCT GGAACCGCAC GTGGTGGTGC TCGTCTATCA CCGCTTTGCA
CCGACAGTGG ATAGCACCAT GACGGTTCGG ATGCAGACAT TCGAGGCGCA TTTACAGGCG
ATCGAGGCGG CGGGTTATCG CATCGTTCCG CTCGCAGACA TCGTGCGCTG GCACGACGGC
GAGCAAGGTG CACTGCCCGC AAAGGCGGTT GCCATTACGG TGGATGACGG CCATCGGTCT
GTGTACGAGA CCTTGTGGCC CGCGCTACGC AGCCGGAGCA TTCCCGTGAC GCTATTTGTG
TACCCGTCTG CCATCTCGAA TGCTCCATAC GCGATGACCT GGCCCCAGTT GCGAGCGTTG
GCCCGCACCG GACAGTTTGG CGTGCAATCC CATACGTACT GGCATCCGGA CTTCCGCGTG
GAGCGGATGC ACCGAAGCGC CGATGATTTC ACCAAGTTCG CCCGCGATCA GTTGCGCCGC
GCGAAGGAGC GCATCGAAAC AGAGATCGGA GCCCCGGTGC ACGCACTGGC ATGGCCCTTC
GGCATCCACG ATCCCGAGCT GGAGCGCCTC GCACGAGAGG AGGGCTATAC CGCAGCCTTC
ACGCTGGACG CGCAACCGCT GCGGGCGAGT CAACCTGCCA TGGCGTTGCC CCGATACCTG
ATCACCGATG GCTGTGGTGC GCAATGCATG GCGAACATTC TCAATGCAGC CGGGGGTGGT
AATCATGAGT AG
|
|---|
| Protein sequence | MNTWVFSLCW AILVFACPGA NADMPALEPH VVVLVYHRFA PTVDSTMTVR MQTFEAHLQA
IEAAGYRIVP LADIVRWHDG EQGALPAKAV AITVDDGHRS VYETLWPALR SRSIPVTLFV
YPSAISNAPY AMTWPQLRAL ARTGQFGVQS HTYWHPDFRV ERMHRSADDF TKFARDQLRR
AKERIETEIG APVHALAWPF GIHDPELERL AREEGYTAAF TLDAQPLRAS QPAMALPRYL
ITDGCGAQCM ANILNAAGGG NHE
|
|---|
| |