| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_4301 |
|---|
| Symbol | |
|---|
| ID | 6285840 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010678 |
|---|
| Strand | - |
|---|
| Start bp | 597896 |
|---|
| End bp | 599086 |
|---|
| Gene Length | 1191 bp |
|---|
| Protein Length | 396 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642618783 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_001892824 |
|---|
| Protein GI | 187926479 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.555384 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCGTC GCCCTCTGAG CTTTGCCCTG CTACTGCCGT TGTTACTGTC GGCACAGCCG
GTTGCGACCG ACAGCTACCT CCCCGCCCTG CCAGCCATTG CCCAGGCGCT GGGATCGGCC
AGCACGAGCC TCACGGTCTT CGCGCTGGCC TTTGGCATCG GGCAACTGCC GATGGGCAGC
CTGGCCGATC GTTTTGGCCG GCGCCATGTG CTGCTGATCG GGCTCGCGTG CTACGCCCTG
GCTGCACTGG CCGGCGCGCT GGCGACAACC GCTTCCATGC TGACCGCTGC GCGCGCGCTG
CAGGGCTTCT CGATGGCCGC CATCCTCGTG TGTGCGCGTG CTGCCGTACG CGATCTGCAC
CCGGCACGCG ATGGTCCGCA CGTCATGGCA CGCGGCCTCA CGGGGCTGGG CTTCGTGGCG
TTGATGGCAC CGATTCTCGG TGCCTTTGTC GCGCAACACG CGGGTTGGCG CTGGGTGCTG
GTGGGCATGA GCCTCTATGC AATCGTGCTG TGGGCGATGT GCTGGTATGG CTTTGCCGAA
ACCCGGCAAG AGACACACAT CCAGGCAGGC AGCGTGCGCG AGATCTTTGC CAGCGCGGAT
TTTCGCGCCT GGGGGCTGCT GGCGGCCACG ACCTACGCCG GCATCTTCTG CTTCCTGCTG
CTCTCGCCGA TGGTCTATAT CGCGTACCTC GGCTTATCGC CCGAGCTTTA TGGTTGGATA
CCGGCTGGCG GCTCGCTCGT CTATATCGTG AGTACGACCG GCTGCCGGCG CCTGCTGCGC
CGCCAGAGCC TCGTGCGGAC GGTGCAGCAA GGCGCCACCC TCAGCCTGGT TGGCGCCGGC
ATCCAGGGTT TGGGCTGCTG GCTGCTTCCC GGACAAGCGT GGCCGCTGCT GCTCGGGCAC
GGCATCTATT GCATGGGCCA CGGCATTCAC CAGCCCTGCG GCCAGGCAGG CGCGGTGGGC
GAGTTGCCGC ACCTTGCGGG GCGCGCGGTG TCATGGTCGG GCTTCATCAT GATGCTGGCG
GCCTTCTGCC TGGGGCAGAC CGCAGCAGCC TTTGATGACA CGTCGCACAG CCTCGGCGCC
TGGCCCATGG TGGTGCCGAT GATGCTTGCC GGCACCGTGC TGGCGTCCAT CGCCTTCCTT
TGGCTGCCGA AGCTGCAGAG CCAGCCGGAT CCACAAAGCG CTGCCGCATA G
|
|---|
| Protein sequence | MTRRPLSFAL LLPLLLSAQP VATDSYLPAL PAIAQALGSA STSLTVFALA FGIGQLPMGS
LADRFGRRHV LLIGLACYAL AALAGALATT ASMLTAARAL QGFSMAAILV CARAAVRDLH
PARDGPHVMA RGLTGLGFVA LMAPILGAFV AQHAGWRWVL VGMSLYAIVL WAMCWYGFAE
TRQETHIQAG SVREIFASAD FRAWGLLAAT TYAGIFCFLL LSPMVYIAYL GLSPELYGWI
PAGGSLVYIV STTGCRRLLR RQSLVRTVQQ GATLSLVGAG IQGLGCWLLP GQAWPLLLGH
GIYCMGHGIH QPCGQAGAVG ELPHLAGRAV SWSGFIMMLA AFCLGQTAAA FDDTSHSLGA
WPMVVPMMLA GTVLASIAFL WLPKLQSQPD PQSAAA
|
|---|
| |