Gene Rpic_3871 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_3871 
Symbol 
ID6285875 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010678 
Strand
Start bp123313 
End bp124284 
Gene Length972 bp 
Protein Length323 aa 
Translation table11 
GC content67% 
IMG OID642618369 
ProductDNA topoisomerase type IA zn finger domain protein 
Protein accessionYP_001892410 
Protein GI187926065 
COG category[V] Defense mechanisms 
COG ID[COG1715] Restriction endonuclease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.821723 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGGCGGA GGAGAAAACA AGCATCCACC AGCGACGTGC TGTTGGCGCT GCCGTGGTGG 
ATGCTGGCCC TTGGCGCGGC GGCCAGTTAT CTGATTTTTC ACAACATCCT CCCGGCGGCG
TTTAGCGCCA ATCCGCTGTT GAGCGGCGTC GGGATGTTGG CGCGCGGGCT GGCCTGGATG
CCCGCGCTGC TGCTCGGCTT CTTTGCCGTG CTGTCGTACT TGCGGGAGCG CAGCCAGCAG
GCCGATGCCC GGCTCGGCCC CCCGCGCACT GAACCGACTG GGCGATCCCG CCCGCCGAAG
GCGCCGCCCC AGCCCGCCCG CAACGCAGCG GGCAGCATCA CGCCCAACCC GCCTCATCCG
ACTCGCAACA CCCCCACCCC CCCACAAGCC GCCACGCCGG CAGAACCCGC CCCGCCCCAA
AGCTGGACGC TGGAGGCCAT CCACGCACTT GAGTGGAAGC GGTTCGAGCT GCTGTGCGTG
CAGTACTACG AGCAGATGGG CTTCACGGTG AAGACGGTGC CGCACGGCGC AGACGGCGGC
ATTGACGCCA CGCTGTACAT GGCTGGCCAG AGCGCGCCCG TGGCGGTGGT CCAGTGCAAG
GCGTGGTCCA AGCCCGTGAA GGTGGAGCAG GTGCGGGCGC TGGGCGGCTC CATGCTGGCG
CACAAGGTCA AGCGGGGCGT GTTCTGGTCT TTGTCCGGTT ATGTCGGCAA CCCGGTGCAG
GAGTATTCCG AGCTTGCCGG TATCCAGCTA TTGGACGGGC CGGCGGTGCT TGAGCGCATC
CGCGCGCTGG CCGAAGACAA GCAGGCCGCG CTGCTGGCGA AGGTGTTTGA GGGGGATTCC
CGAACGCCTT CGTGCCCGGC TTGCGGGGTG AAGCTGGTGG CGCGGAATGG GAAGAGTGGG
GCGTTTTGGG GGTGTAGCAA TTTCCCTAAG TGTTGGAATC GATTGGAGAT GAAGCACGGC
GTGTCTATGT AG
 
Protein sequence
MGRRRKQAST SDVLLALPWW MLALGAAASY LIFHNILPAA FSANPLLSGV GMLARGLAWM 
PALLLGFFAV LSYLRERSQQ ADARLGPPRT EPTGRSRPPK APPQPARNAA GSITPNPPHP
TRNTPTPPQA ATPAEPAPPQ SWTLEAIHAL EWKRFELLCV QYYEQMGFTV KTVPHGADGG
IDATLYMAGQ SAPVAVVQCK AWSKPVKVEQ VRALGGSMLA HKVKRGVFWS LSGYVGNPVQ
EYSELAGIQL LDGPAVLERI RALAEDKQAA LLAKVFEGDS RTPSCPACGV KLVARNGKSG
AFWGCSNFPK CWNRLEMKHG VSM