| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6974 |
|---|
| Symbol | |
|---|
| ID | 6280172 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 3349369 |
|---|
| End bp | 3350955 |
|---|
| Gene Length | 1587 bp |
|---|
| Protein Length | 528 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642617997 |
|---|
| Product | Na+/H+ antiporter |
|---|
| Protein accession | YP_001890633 |
|---|
| Protein GI | 187921601 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0025] NhaP-type Na+/H+ and K+/H+ antiporters |
|---|
| TIGRFAM ID | [TIGR00831] Na+/H+ antiporter, bacterial form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000000126561 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 61 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTCCG TCATGGGCTT CAAAGTCGTC CTGCTATCGC TCGTCGCGAT CATCGGTCTC
GAACTGCTCG CCAAGCGGCT GCGTCTGCCG CCCGCGGCCG CGCTCCTGGT CGGCGGTGCC
GCGATGGCTT TCGTGCCCGG TCTGCCACGT TTCAATCTCG ATCCCGAACT GGTCCTGATC
GTGTTCCTGC CGCCGCTCCT CATGGACGGC GCGTACTTCT CCGTGTGGGA CGAGTTCAAG
AACAACCTGG GCGGCATCCT GCTGCTTGCG ATCGGCGCCG TCGCGTTCAC CACGCTCACG
GTCGGGCTGG TCGTGCATTG GGTCGTGCCC GCCCTGCCAT GGGGCGCGTG CTTCGCGTTG
GGTGCGATCG TCTCGCCGCC CGACGCCGTC GCCGCGAAGG CGGTGCTCGA ACGTGTCGCG
CTGCCGCGCC GCCTGATGGT GCTGCTCGAA GGCGAGAGTC TCCTCAACGA CGCAGCCGGA
CTCGTGCTGT TCCGCTTTGC AGTCGCGGCC GCACTGACCG GCACCTTCAG CGCGCAGCAT
GCGGCCGGAC GCTTCGCCGT GCTCGCGTTG GGTGGCGTGG CAGTGGGCGT GACGATCGGC
TTCGTGGTCG TCAAGCTGCT GCGTTATCTC CACGACGGGT ATCTCATCAT CACCGCGGCG
ACCCTGTCCG CGTGGATCAG CTACATCGCC GGCGACACAC TGGACGTGTC GGGCGTGATC
GCGACCGTGA GCTGCGGGAT GGTGCTCGGC TGGCATCAGC ATGAAGTCTT TTCGGCGGCA
GTACGCATGC GCGGCACGGC CTTCTGGCAG GTCGTGATCT TCCTGATGGA AGCGCTCGTG
TTCATTTTGA TCGGACTGTC GCTGCGCGGT GTCATGGTGC GACTAGGCGG CTTCGGCGAC
GCGTTGACCG CATTCGGCCC GGCCGTCGGC GCGGTACTCG CGGTAGTCGT GCTGTCGCGC
TTTGTGTGGG TCTTCGCGGT GGAATGGTTG AAAGCGCTGG TATGTAAAAT GACAGGCCGC
GCGGGCGGTA CGCCCGACTG GCGCTCCGCG ACTGTCACGA GTTGGGCCGG CATGCGTGGC
GTGGTTACGC TGGCCATCGC GCTCTCCTTG CCGGAGACGA TGCCGGGCCG CGATCTGATC
CTGGTCGCTT CATTCGCCGT GATTCTGGTC ACGGTGCTCG GTCAAGGCAC GACAATAGGA
CCGCTGATTC GATGGATCAA TCCGGACCAC GCATCCGAAC GAAACCAACA GCATCTGACT
GAGCCGCAGG CGTGGGCGCG GCTCGAAGCC GCGCAGCTCG CCGCGATTCA GCCGCTCGTG
CACGGACCGG ATGGCAGCGT GATTCATCCG CGCTTGCTGG AACAGTACAG CTATCGTGCG
CGCATGACCG AGGCTCATCA GGACGAAGCC GCGTTTCCCG CGAAGGAACG CGCCGCACAC
TACGACGTGG TGCTGGCCGC CGTTTCGGCG GCACGCGCCG AGCTATTGCA TCTGCATCGA
ACGGGCTTGC TTCACGATAA ACTGCTGACC GTGCTCGAAC ACGATCTCGA TCTGCAGGAA
ATCGCAGCGA TGCATGGCCG AGGCTGA
|
|---|
| Protein sequence | MSSVMGFKVV LLSLVAIIGL ELLAKRLRLP PAAALLVGGA AMAFVPGLPR FNLDPELVLI
VFLPPLLMDG AYFSVWDEFK NNLGGILLLA IGAVAFTTLT VGLVVHWVVP ALPWGACFAL
GAIVSPPDAV AAKAVLERVA LPRRLMVLLE GESLLNDAAG LVLFRFAVAA ALTGTFSAQH
AAGRFAVLAL GGVAVGVTIG FVVVKLLRYL HDGYLIITAA TLSAWISYIA GDTLDVSGVI
ATVSCGMVLG WHQHEVFSAA VRMRGTAFWQ VVIFLMEALV FILIGLSLRG VMVRLGGFGD
ALTAFGPAVG AVLAVVVLSR FVWVFAVEWL KALVCKMTGR AGGTPDWRSA TVTSWAGMRG
VVTLAIALSL PETMPGRDLI LVASFAVILV TVLGQGTTIG PLIRWINPDH ASERNQQHLT
EPQAWARLEA AQLAAIQPLV HGPDGSVIHP RLLEQYSYRA RMTEAHQDEA AFPAKERAAH
YDVVLAAVSA ARAELLHLHR TGLLHDKLLT VLEHDLDLQE IAAMHGRG
|
|---|
| |