Gene Bphyt_6938 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_6938 
Symbol 
ID6277790 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010676 
Strand
Start bp3308316 
End bp3309794 
Gene Length1479 bp 
Protein Length492 aa 
Translation table11 
GC content65% 
IMG OID642617965 
ProductPAS modulated sigma54 specific transcriptional regulator, Fis family 
Protein accessionYP_001890601 
Protein GI187921569 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.776429 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones42 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGAACG ACTGGGCAGG CCTTCCTGCC ACTTACGGCG ACGTACTGCG CCGGGCGATG 
GACTCGCTTT TCCGCACGTT CGAAAACTTC AGCGAAGGCA CCTTTATCGT CGATGCCGAC
GCGCGCGTGG TCTGGATCAA CAAGCGCTAT GCGGCGCGCT TCGGTTTTGC GGACCCCGAG
CAGGCCATTG GCCGCGATTG CGAAGCGGTG ATTCCGAACA GCCTGATGCG CGAGGTCGTG
AACACCGGCA AACCGATTCT GCTCGATATT CTCGAAACGG ATCGCGAACC GCTCGTCGTC
ACGCGTTTGC CGCTGAAAGA CGATGCGGGC GCCACGGTCG GCGCAGTTGG TTTCGCGCTG
TTCGACGAAC TGAAGGCGCT GACGCCGCTC TTTTCCCACT ACTCGCGCGT GCAGGAAGAG
TTGATCGCCA CGCGCCGGTC GCTCGCCCAG GCGCGGCGCG CCAAATATAC GTTCGGCAGT
TTCGTCGGCA CGAGCGCGGC CAGCCTCGAA GTAAAGCGTC AGGCGCGCCG CGCCGCGCAG
CTCGAATCGC CGGTGCTGCT GCTCGGCGAA ACCGGCACCG GCAAGGAACT GCTCGCGCAT
GCCATTCACG GCGGCTCGGC GCGCGCGAAT CAGCCGCTCG TGACGGTCAA CGTCGCGGCG
ATTCCCGACA CCCTGCTCGA AGTCGAATTC TTCGGCGCCG CGCCCGGCGC CTATACCGGC
GCGGACCGCA AAGGGCGCGT CGGCAAGTTC GAACTGGCGA ACGGCGGCAC GCTGTTTCTC
GACGAAATCG GCGACATGCC GCTGCCCTTG CAGGGCAAGC TGCTGCGCGT GTTGCAGGAC
AAGGAGTTCG AACCGCTCGG CTCGAACCGG ATCGTGCGCG CCGACGCCCG GATCATCGCG
GCGACGTCGG CCGATTTGCC CGCGCTGGTC GCGGCCGGGC GCTTTCGCGC GGACCTGTTC
TATCGGCTGA ACGTGCTGAC GATCCATGCG CCGCCATTGC GCGAGCGCAC CTCCGATATC
GAGGCGCTCG CTTACGCCAT GCTCGAGGAT CTGTCGACGC AAGCGCGCGG CGCCAGTCAT
TTCGAATTGC AGGACGACGC GCTGCGGCTG CTGTGTTCAT ACGGCTGGCC GGGCAATGTG
CGCGAATTGC GCAACACGCT GGAGCGTGCC GTGATGCTGT CCGACAGCGA GCGGATCGAT
GCGCGGGCGC TGGCGCCGTT TGTCGGCTCG GCGCCCGGCG GCGCGCATCG TCCGAATGCG
CCGTTACCTG AGGCGCTTTC GACGACGCAA CCGGCAAACG CCCAGCCTAC TCCGCCTGAA
TCGGCCACGT GGAGTGAGGC GATGGCGGCC TTCGAAAAGC GATTCCTGAG CGATGCTTTG
CGCGCCAATG GCGGTCGGGT GATCGATACG GCAAACCAGA TCGGAATGGG CCGCGCGACG
CTCTATAAGA AGATCGCGGC ACACGGCATC GACGTGTGA
 
Protein sequence
MMNDWAGLPA TYGDVLRRAM DSLFRTFENF SEGTFIVDAD ARVVWINKRY AARFGFADPE 
QAIGRDCEAV IPNSLMREVV NTGKPILLDI LETDREPLVV TRLPLKDDAG ATVGAVGFAL
FDELKALTPL FSHYSRVQEE LIATRRSLAQ ARRAKYTFGS FVGTSAASLE VKRQARRAAQ
LESPVLLLGE TGTGKELLAH AIHGGSARAN QPLVTVNVAA IPDTLLEVEF FGAAPGAYTG
ADRKGRVGKF ELANGGTLFL DEIGDMPLPL QGKLLRVLQD KEFEPLGSNR IVRADARIIA
ATSADLPALV AAGRFRADLF YRLNVLTIHA PPLRERTSDI EALAYAMLED LSTQARGASH
FELQDDALRL LCSYGWPGNV RELRNTLERA VMLSDSERID ARALAPFVGS APGGAHRPNA
PLPEALSTTQ PANAQPTPPE SATWSEAMAA FEKRFLSDAL RANGGRVIDT ANQIGMGRAT
LYKKIAAHGI DV