| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6660 |
|---|
| Symbol | |
|---|
| ID | 6278746 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 2974087 |
|---|
| End bp | 2974812 |
|---|
| Gene Length | 726 bp |
|---|
| Protein Length | 241 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642617692 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001890329 |
|---|
| Protein GI | 187921297 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 0.527172 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTAGCA AGAAAACCAT CGCGCTGTTC GGCGCCGGCA CCGGTCTCGG AGCTTCCCTT
GCGCACCGGT TCGGAAGCGC GGGGTATCGC GTTGCGCTCG TCGCGCGGCG TGCCGCGCCG
CTAGAGGAGC GAGTAGCCGC ACTGGCTGTC GCCGGTATCG AGGCGGTCGC CTTTCCTGCC
GATCTCACCG ATCTCGACGG CATTCCCGCG CTCGTCCGTT CGGTCAAGGA TCGGCTCGGC
GCTATCGATG TGGCCGTCTT TGCGCCAGCC CCATCCGATG CGAGCTTTGT CCCGGCAGTG
GACCTCGATG CGTCGACACT ACAGTCCATG GCCAACATCT TCACGTTCGC GCCTGTGGAG
GTATCGCATG CGGTGCTTCC GGGCATGCTC GCCCGCGGCG ATGGCGCGAT CGTGATCGTC
GGCGGGCTGA CGGCCGTGGT GACGAGGCCT GGCATGAGTG GTGTTGGCCC CCTCATGGCG
GCCACGCGCA ACTACGTGCT TACGCTCAAT GCAGAGGTGG CGTCCAGGGG CGTTTATGCC
GGGATGGTGA ACATCGGCGC GGTCATTGAT CGCTCGACGG GCTTGCGTGC CATGACCGCC
AGCGGCGCAG CGCTCGACCC GAATCTTCCG GTCATCGACC CGGACACAAT TGCTGAAGAA
ATTCAGACCC TCGTCGCGAG GCGCGATCGG GTCGAGTCGA TTCTTCCGCC TTTGCCCCAG
TCGTGA
|
|---|
| Protein sequence | MTSKKTIALF GAGTGLGASL AHRFGSAGYR VALVARRAAP LEERVAALAV AGIEAVAFPA
DLTDLDGIPA LVRSVKDRLG AIDVAVFAPA PSDASFVPAV DLDASTLQSM ANIFTFAPVE
VSHAVLPGML ARGDGAIVIV GGLTAVVTRP GMSGVGPLMA ATRNYVLTLN AEVASRGVYA
GMVNIGAVID RSTGLRAMTA SGAALDPNLP VIDPDTIAEE IQTLVARRDR VESILPPLPQ
S
|
|---|
| |