| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6560 |
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| Symbol | |
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| ID | 6279523 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | - |
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| Start bp | 2850548 |
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| End bp | 2852977 |
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| Gene Length | 2430 bp |
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| Protein Length | 809 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 642617587 |
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| Product | formate dehydrogenase, alpha subunit |
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| Protein accession | YP_001890230 |
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| Protein GI | 187921198 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
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| TIGRFAM ID | [TIGR01553] formate dehydrogenase, alpha subunit, proteobacterial-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.22445 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.0150185 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGAACC ATTGGGTCGA CATCAAGAAC GCGGATGTGA TTCTGGTAAT GGGCGGCAAT
GCGGCCGAGG CGCACCCGTG CGGTTTCAAA TGGGTCACTG AAGCCAAAGC GCATCGCAAG
GCGAGGTTGA TCGTGGTCGA TCCGCGCTTT ACGCGCACGG CATCGGTCGC GGACTATTAC
GCGCAGATTC GGACCGGCTC GGACATCGTG TTCCTGGGCG GGGTGATCAA CTATCTGCTT
ACCAACGACA AGATCCAGCA CGAGTATGTG AAGAACTACA CGGACATGCC GTTCATCGTT
CGTGAGGACT TTTCGTTTAC CGACGGTCTT TATTCCGGCT ACGACGCTGG CAAACGCAAG
TACGACCAGA GTTCGTGGGA CTACGAACGC GGCGACGACG GCTATGCGAA AGTCGATCCG
ACCTTGCAGC ACCCGCGCTG CGTCTATCAG TTGATGAAGC AGCACTACTC GCGCTATACG
CCCGAACAGG TCGAGAGCAC GTGCGGCACG CCCAGGGAAA AATTCCTCAA GGTGTGCGAG
ATGCTCGCAT CGACGGCGGT TCCGGGGCGC GCCGGTACGA TCCTGTACGC GCTCGGCTGG
ACGCATCACT CGATCGGCGC GCAGATCATT CGCACCGGCG CGATGGTGCA ATTGCTGCTG
GGCAATATCG GCATTGCGGG CGGCGGCATG AATGCGCTGC GCGGTCACTC GAACATTCAA
GGTTTGACCG ACCTCGGCCT GATGTCGAAC CTGTTGCCGG GTTACATGAC GCTGCCGCTG
GAAGCCGAGC AGGACTTCGA CGCCTTCATC GCGAAACGCG CAAGCCAGCC GCTGCGGCCG
AATCAGTTGA GCTACTGGCG CAACTATCGC GCGTTCCATG TCAGTTTCAT GAAGTCATGG
TGGGGCGACA ACGCGACCGC CGAGAACAAC TTCGGTTTCG ACTATCTGCC CAAGCTCGAT
AAGTCGTACG ACATGCTGCA GGTCTTCGAG CTGATGAATC AAGGCAAGAT GAACGGCTAC
ATCGCGCAGG GCTTCAATCC GCTTGCCGCG GCGCCGAACA AGGCGAAGAT CGGCGCGAGT
CTGGCCAAGC TGAAGTGGCT GGTCGTCATG GATCCGCTCG CTACGGAAAC GTCGGAGTTC
TGGAAGAACT TCGGCGAGTT CAACGACGTG GATCCGTCGA AGATTCAAAC GGAGGTGTTC
CGTTTGCCGA CCACCTGTTT CGCGGAAGAA CGCGGCTCGC TGGTCAGTTC CAGCCGTGTG
CTGCAGTGGC ACTGGCAGGG CGCGGTCGGG CCCGGAGAAG CGAAGAGCGA CCTCGAGATC
ATGTCGGGGC TGTGGCTGCG TATCCGTGCG GCTTACCGTA AGGACGGCGG CAAATATCCG
GATCCGATTC TCAAGATGAG TTGGCCGTAT GCCGATCCGG AAAGCCCGAC GCCCGAAGAA
ATCGCCATGG AGTTCAACGG CAAGGCGCTC GCCGACGTCA CCGACCCGAC CGATAAAACC
AAGGTGCTCG CCAAACAGGG CGAGCAGCTG TCGAGCTTCG CGCAGTTGCG CGACGACGGC
AGCACCGCGA GCGGCTGCTG GATCTTTTGC GGCTCATGGA CCCAGGCGGG CAACCAGATG
GGCCGCCGCG ACAACTCCGA CCCGACCGGC ATCGGCAACA CGCTGAACTG GGCGTGGGCC
TGGCCGGCGA ACCGGCGGAT TCTGTACAAC CGTGCTTCGT GCGACGTCAG CGGCAAGCCG
TTCGATCCGA CGCGCAAGCT GATCGCGTGG AACGGCAAGG CGTGGACGGG AGCGGACATT
GCCGACTTCA AGGCCGACGA ACCGCCCGAA AACGGCATGA ATCCGTTCAT CATGAACGCG
GAAGGCGTGG CGCGTTTCTT CTCGCGCGAC GGTCTGGTTG AAGGGCCGTT CCCGGAGCAC
TACGAGCCGT TTGAAACGCC GCTTGGCTAC AACCCGCTGC ATCCGAACAA CAAGGCGGTC
GTCAGCAGTC CGGCGGCACG CGTGTTCCCC GATGACCGGG CCGCGTTCGG CACGCACGAA
AACTTCCCGC ATACGGCGAC CACGTATCGT TTGACGGAGC ATTTCCATTA CTGGACCAAG
CACGCGCGCT TGAACGCGAT CGTGCAGCCG CAACAGTTCG TGGAGATCGG CGAGGACCTG
GCGAAGGAAG TGGGCGTGGT GGCCGGCGAT CGCATCAAGG TGTCGTCCAA TCGCGGGCAT
ATCATTGCCG TGGCGCTCGT CACCAAGCGG ATCAAACCGT TGATGATCGA AGGAAAGAAG
GTTCAGACAG TCGGATTGCC GTTGCATTGG GGCTTCAAGG GAGTTGCGAA GCCGGGCTAT
CTCGTCAACA CGCTGACGCC CTCCGTGGGC GATGGGAATT CGCAAACACC GGAATTCAAA
TCGTTCCTCG TCAAGGTCGA AAAGGCATAG
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| Protein sequence | MTNHWVDIKN ADVILVMGGN AAEAHPCGFK WVTEAKAHRK ARLIVVDPRF TRTASVADYY
AQIRTGSDIV FLGGVINYLL TNDKIQHEYV KNYTDMPFIV REDFSFTDGL YSGYDAGKRK
YDQSSWDYER GDDGYAKVDP TLQHPRCVYQ LMKQHYSRYT PEQVESTCGT PREKFLKVCE
MLASTAVPGR AGTILYALGW THHSIGAQII RTGAMVQLLL GNIGIAGGGM NALRGHSNIQ
GLTDLGLMSN LLPGYMTLPL EAEQDFDAFI AKRASQPLRP NQLSYWRNYR AFHVSFMKSW
WGDNATAENN FGFDYLPKLD KSYDMLQVFE LMNQGKMNGY IAQGFNPLAA APNKAKIGAS
LAKLKWLVVM DPLATETSEF WKNFGEFNDV DPSKIQTEVF RLPTTCFAEE RGSLVSSSRV
LQWHWQGAVG PGEAKSDLEI MSGLWLRIRA AYRKDGGKYP DPILKMSWPY ADPESPTPEE
IAMEFNGKAL ADVTDPTDKT KVLAKQGEQL SSFAQLRDDG STASGCWIFC GSWTQAGNQM
GRRDNSDPTG IGNTLNWAWA WPANRRILYN RASCDVSGKP FDPTRKLIAW NGKAWTGADI
ADFKADEPPE NGMNPFIMNA EGVARFFSRD GLVEGPFPEH YEPFETPLGY NPLHPNNKAV
VSSPAARVFP DDRAAFGTHE NFPHTATTYR LTEHFHYWTK HARLNAIVQP QQFVEIGEDL
AKEVGVVAGD RIKVSSNRGH IIAVALVTKR IKPLMIEGKK VQTVGLPLHW GFKGVAKPGY
LVNTLTPSVG DGNSQTPEFK SFLVKVEKA
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