Gene Bphyt_6542 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_6542 
Symbol 
ID6279978 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010676 
Strand
Start bp2831032 
End bp2832120 
Gene Length1089 bp 
Protein Length362 aa 
Translation table11 
GC content54% 
IMG OID642617573 
ProductABC transporter related 
Protein accessionYP_001890216 
Protein GI187921184 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3842] ABC-type spermidine/putrescine transport systems, ATPase components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.0867904 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCTTCC TCACACTTCA GAATATCTCA AAGCGTTACG GCAACTTTAC TGCTACTTCC 
AATCTTGACC TCGAAGTGAA GCGGGGCGAA TTGTTGGCGC TGCTCGGTCC TTCGGGATGC
GGAAAGACGA CTACCCTTCA GATGATTGCT GGATTCGTCA CGCCGACCAC GGGCAGCGTG
ATTCTCGATG GCCGGGACAT CACTACAGAG CGACCAGAAA AGCGAGCTAT TGGCGTTGTG
TTCCAGAGCT ACGCATTGTT CCCACACATG ACGGTGTCGG ATAACGTTGG CTTCGGCCTT
GAAATGCGTA AGGTCAACCG TGCAGACCGT AAAAAAAGCA TTGCCGAATC CTTGGATTTC
GTTCGGCTAA ATGGGCTCGA CCATCGCTAT CCAAAAGAGC TCTCAGGCGG GCAGCGTCAG
CGGGTGGCAA TAGCGCGCGC AATTGCGATG AAGCCTGAGC TTCTCCTCCT CGACGAGCCG
ATGTCAAATC TTGACGCAAA GTTACGTGAA GAAATGCATA TCGAATTGCG GGCGATTCAG
AAGCGCTTGG ACATTACGAC GATTCTGGTC ACTCATGACC AGGTCGAAGC GATGACGATG
AGTGACCGAA TCGCGGTAAT GCATCAAGGA AAGATTGCGC AGATATCGAC GCCGTTTGAC
GCATATGAGC GTCCGTCAAC GCCATTCACG TCGACATTTT TGGGCCGCAC GAATGCGCTG
ACCGGCAGTG TCGTGGGCCG CAATCCTCGG TGCGCTGAAG TCGCTATTGC AGACAAGGTG
CTACTCGTCC CGCATGAAGG GCGCTCGGTT AAGGGCACCG TTAATGTGTA CATTCGCCCG
GAAAAAGTGC GGGTTGTGAG CAATGACGCG CGCGTCCGAG GTCGTGTGTT CACGCGAGTC
TTTGTCGGTA ATCAATGGCT ACTTGAGGTC GAGACGCAAT TTGGCAAGCT GAAGGTTGCT
CAGACAAATC AAGGCGTTCC GCCTCCCGAA GAAGGGCACA ACGTGGGTCT GACGTGGAGT
GATGATGACC TGCGAATGCT GAGCGCTAAC GAGCGAGTCG GGTTGGAGGT CCAAAATGGC
AACGCATGA
 
Protein sequence
MSFLTLQNIS KRYGNFTATS NLDLEVKRGE LLALLGPSGC GKTTTLQMIA GFVTPTTGSV 
ILDGRDITTE RPEKRAIGVV FQSYALFPHM TVSDNVGFGL EMRKVNRADR KKSIAESLDF
VRLNGLDHRY PKELSGGQRQ RVAIARAIAM KPELLLLDEP MSNLDAKLRE EMHIELRAIQ
KRLDITTILV THDQVEAMTM SDRIAVMHQG KIAQISTPFD AYERPSTPFT STFLGRTNAL
TGSVVGRNPR CAEVAIADKV LLVPHEGRSV KGTVNVYIRP EKVRVVSNDA RVRGRVFTRV
FVGNQWLLEV ETQFGKLKVA QTNQGVPPPE EGHNVGLTWS DDDLRMLSAN ERVGLEVQNG
NA