Gene Bphyt_6389 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_6389 
Symbol 
ID6278014 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010676 
Strand
Start bp2650253 
End bp2651896 
Gene Length1644 bp 
Protein Length547 aa 
Translation table11 
GC content62% 
IMG OID642617433 
Productglucose-methanol-choline oxidoreductase 
Protein accessionYP_001890076 
Protein GI187921044 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2303] Choline dehydrogenase and related flavoproteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones64 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCTTGATG AAGCTCAACA TCATCCGCGC GGCAAGAACG GTCGCGCTCC CGATGTATTC 
GAACGTGGCG GTTGGGTGCC GATGCGCGAG TATCCGAATG ACGAAGAGGT CGACTTCGCG
ATCGTCGGCA CGGGTGCGGG AGGCGGTACG CTCGCCTGCC GGCTCGCGGA GCAGGGCTTT
AAGGTCGTAG CATTCGATGC CGGCGCATGG TGGCGGCCAC TCGAAGAATT CGCCTCCGAC
GAAAGCCATC AGGCGAAGCT CTACTGGACC GACGAACGCA TCTGCGACGG CGAAAACCCG
CTCAAGCTCG GCAATAACAA TAGCGGCAAG GCCGTTGGCG GCAGCACAGT GCACTTCGCC
ATGGTGTCGC TGCGCTTTCG TCCTGAGTGG TTCAGGTCGC GCAGCGTGCT CGGTTATGGT
GCCGACTGGC CGCTCGACTG GCGCGAGATG TGGCGTTACT ACGCGCAGGT CGAAGACGCG
CTGAAGATCT CAGGTCCGGT CAATTATCCG TGGGGGCCGA AGCGGCCCCG CTATCCACAT
CGCGCGCACG AATTAAATGC TGCGGCGCTC GTGCTTGCGC GCGGCGCAGA GGCGCTGGGC
ATCGACTGGA CGGCCACCCC CCTGGCGACG CTGTCGGCGC CGCGCGGCAA GGCGCACCCG
TGCGTGTACC GTGGCTTTTG CACTTCGGGG TGCGCAACCA ACGCCAAGCA GAGCGCATTG
GTCACGTGGA TTCCGCGCGC GGTGAGTGCC GGTGCGGAAA TACGCGATCT GGCAATGGTT
GGACGCATTG CCACGAACGA CGCCGGGCTC GCAACGGGTG TGGAGTATCG GCGCGAAGGC
CGCTGGCAGT TCCAGCGTGC GAAGCATGTC GTAGTGGCCG GCTATGCAAT CGAAACGCCG
CGTCTATTGC TGATGTCGGC AAATGGCCGC TTTCCGCAAG GCCTTGCAAA CAGTTCGGGC
CTGGTTGGCA AAAACCTCAT GGCGCAGTCG AACCAGGCCG TCTACGGCAC GTTCGACGAG
GAAATCCGCT GGTACAAAGG ACCACCTTCG TTAGCGATCA CCGAACACTG GAATTACAAG
GACACCGGAA AAGATTTCTT CGGCGGCTAT TGCTACATGA GCCAGGGACC ATTGCCCGCC
GGCTGGGCGA GCGTACAGAA CGGCCGCGGC TTATGGGGCG ATGCGTTAGC CGGCGAGATG
CACAAATACA ATCATCAAGC CGGGTTAAAA ATCGTCGGCG AGACCTTGCC GCAGGAACGC
AACCGTGTGA CGCTCGCCGA CGAAAAAGAT CAGTACGGGC TACCCGTGGC GCGGGTGACT
TATTCGCTGT GCGATAACGA CAAGCGGCTG ATCGCACACT CCCTGGACTT CATGGAACAG
GCGATCCGGG CGGCCGGCGG CAACGAAATA TGGCGGGAAA ATGACGACAC CTGTCATCTG
AACGGCACCG CGCGCATGGG CGACGATCCT TCGACCAGCG TGGTCAATGC AGACTGCCGA
AGCTGGGACA TACCCAATCT ATGGGTATGC GACGGCTCGG TGTTTCCGAC TGTCGGCGGT
GTGAATCCTT CGCTGACCAT TCAGGCGATA GCGTGCCGCA CAGCCGAGCG TATCGCCGCA
CTGGCTGCGC GAGGGGAACT GTAA
 
Protein sequence
MLDEAQHHPR GKNGRAPDVF ERGGWVPMRE YPNDEEVDFA IVGTGAGGGT LACRLAEQGF 
KVVAFDAGAW WRPLEEFASD ESHQAKLYWT DERICDGENP LKLGNNNSGK AVGGSTVHFA
MVSLRFRPEW FRSRSVLGYG ADWPLDWREM WRYYAQVEDA LKISGPVNYP WGPKRPRYPH
RAHELNAAAL VLARGAEALG IDWTATPLAT LSAPRGKAHP CVYRGFCTSG CATNAKQSAL
VTWIPRAVSA GAEIRDLAMV GRIATNDAGL ATGVEYRREG RWQFQRAKHV VVAGYAIETP
RLLLMSANGR FPQGLANSSG LVGKNLMAQS NQAVYGTFDE EIRWYKGPPS LAITEHWNYK
DTGKDFFGGY CYMSQGPLPA GWASVQNGRG LWGDALAGEM HKYNHQAGLK IVGETLPQER
NRVTLADEKD QYGLPVARVT YSLCDNDKRL IAHSLDFMEQ AIRAAGGNEI WRENDDTCHL
NGTARMGDDP STSVVNADCR SWDIPNLWVC DGSVFPTVGG VNPSLTIQAI ACRTAERIAA
LAARGEL