| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5998 |
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| Symbol | |
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| ID | 6280416 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | - |
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| Start bp | 2226021 |
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| End bp | 2227184 |
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| Gene Length | 1164 bp |
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| Protein Length | 387 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642617059 |
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| Product | phosphonopyruvate decarboxylase |
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| Protein accession | YP_001889702 |
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| Protein GI | 187920670 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]
[COG4032] Predicted thiamine-pyrophosphate-binding protein |
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| TIGRFAM ID | [TIGR03297] phosphonopyruvate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.412851 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATAGAGG CAGCACAGTT CGTCGAGGCG GCGCGCGAGC GCGGCTTCGA CTGGTATGCG
GGCGTGCCGT GCTCGTATTT GACGCCGTTC ATCAACTACG TGTTGCAGGA CGAATCGCTG
CATTACGTGT CGGCGGCCAA TGAAGGCGAC GCCGTTGCGT TGATCGCGGG CGTCACACTC
GGCGCGCAAA ACGGCCGGCG CGGCATCACC ATGATGCAGA ACTCCGGGCT CGGCAACGCC
GTCAGCCCGT TAACCTCGCT CACGTGGACC TTCCGTTTGC CGCAATTGCT GATCGTCACG
TGGCGCGGCC AGCCCGGCGT CGCCGACGAA CCGCAGCACG CGCTGATGGG CCCGGTCACG
CCCGCGATGC TCGACACCAT GGAAATTCCG TGGGAAACCT TCCCGACCGA AGCCGACGCC
ATTGGCCCGG CGCTCGATCG CGCCATCGCG CATATGGATG AAACCGGCCG CCCGTATGCG
CTCGTGATGC AGAAGGGCAG CGTGGCGCCT TACGAGCTGA AGGACAGCGG CGCCAACGAA
CGCCGCGCGC CCGTCGCGCC GCAATCGCAA TTCACGAATG TGGCGGCGAG CGAATTGGCT
TCGCGTCACG ATGCGCTGAA CAAGGTGATC GCGCACACGC CGCTCGAATC GACGGTGGTG
CTCGCGTCGA CCGGCTTTTG CGGGCGCGAA CTCTACGCGA TCGACGATCG TCCGAACCAG
TTGTACATGG TCGGCTCGAT GGGTTGCGTG ACGCCGTTCG CGCTGGGTCT TGCGTTGTCG
CGTCCCGACC TGCATGTGGT CGCGCTCGAC GGCGACGGCG CCGCGCTGAT GCGCATGGGC
GCGTTCGCCA CCCTCGGCGC GTACGGTCCG TCGAATCTCA CGCACGTGCT GCTCGATAAC
GGCGCGCACG ATTCGACCGG CGGTCAGGCG ACGGTGTCGT CGCAGGTTTC GTTTGCGGGC
GTGGCCGCGG CGTGCGGTTA TGCGTCGGCG CTCGAAAGCG ACGACGTGAA CGCGATCGAC
GCCCTGTTCG AAGCGGCGCC GCTCGACGGC CCGCGCTTCC TGCGTCTGGC CATTCGGCGC
GGCACGCCCG ACGGGCTGCC GCGCCCCACC ATCACGCCGC CCGATGTGAA GACGCGTTTG
ATGCGCCACA TCGGCGCCGC TTAA
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| Protein sequence | MIEAAQFVEA ARERGFDWYA GVPCSYLTPF INYVLQDESL HYVSAANEGD AVALIAGVTL
GAQNGRRGIT MMQNSGLGNA VSPLTSLTWT FRLPQLLIVT WRGQPGVADE PQHALMGPVT
PAMLDTMEIP WETFPTEADA IGPALDRAIA HMDETGRPYA LVMQKGSVAP YELKDSGANE
RRAPVAPQSQ FTNVAASELA SRHDALNKVI AHTPLESTVV LASTGFCGRE LYAIDDRPNQ
LYMVGSMGCV TPFALGLALS RPDLHVVALD GDGAALMRMG AFATLGAYGP SNLTHVLLDN
GAHDSTGGQA TVSSQVSFAG VAAACGYASA LESDDVNAID ALFEAAPLDG PRFLRLAIRR
GTPDGLPRPT ITPPDVKTRL MRHIGAA
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